Evidence map›Paper›PMID 32913898›Full record

ArticleBiomedical research and clinical practice2018

Risk assessment for indeterminate pulmonary nodules using a novel, plasma-protein based biomarker assay.

Neil N Trivedi, Mehrdad Arjomandi, James K Brown, Tess Rubenstein, Abigail D Rostykus, Stephanie Esposito, Eden Axler, Mike Beggs, Heng Yu, Luis Carbonell and 7 more

Open access · diamondAbstract read
In one paragraph

Article in Biomedical research and clinical practice, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Lung cancer screening: where do we stand?Breathe (Sheffield, England) · 2024
    Review
  4. Circulating proteome for pulmonary nodule malignancy.Journal of the National Cancer Institute · 2023
    Article
  5. Biomarkers in Lung Cancer Screening: a Narrative Review.Current challenges in thoracic surgery · 2023
    Article
  6. Review
  7. Article
  8. The impact of the lung EDRN-CVC on Phase 1, 2, & 3 biomarker validation studies.Cancer biomarkers : section A of Disease markers · 2022
    Article
  9. Integrated Biomarkers for the Management of Indeterminate Pulmonary Nodules.American journal of respiratory and critical care medicine · 2021
    Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Neil N TrivediSan Francisco Veterans Affairs Medical Center, 4150 Clement St, San Francisco, CA, USA.
Mehrdad ArjomandiSan Francisco Veterans Affairs Medical Center, 4150 Clement St, San Francisco, CA, USA.
James K BrownSan Francisco Veterans Affairs Medical Center, 4150 Clement St, San Francisco, CA, USA.
Tess RubensteinSan Francisco Veterans Affairs Medical Center, 4150 Clement St, San Francisco, CA, USA.
Abigail D RostykusSan Francisco Veterans Affairs Medical Center, 4150 Clement St, San Francisco, CA, USA.
Stephanie EspositoThe University of Pennsylvania, Philadelphia, USA.
Eden AxlerThe University of Michigan, 500 S State St, Ann Arbor, MI, USA.
Mike BeggsMagArray Inc, Milpitas, CA, USA.
Heng YuMagArray Inc, Milpitas, CA, USA.
Luis CarbonellMagArray Inc, Milpitas, CA, USA.
Alice JuangMagArray Inc, Milpitas, CA, USA.
Sandy KamerMagArray Inc, Milpitas, CA, USA.
Bhavin PatelMagArray Inc, Milpitas, CA, USA.
Shan WangMagArray Inc, Milpitas, CA, USA.
Amanda L FishMagArray Inc, Milpitas, CA, USA.
Zaid HaddadVancouver, BC, Canada.
Alan Hb WuUniversity of California, San Francisco, USA.
MagArray (United States) · USSan Francisco VA Medical Center · USUniversity of California, San Francisco · USUniversity of Michigan–Ann Arbor · USUniversity of Pennsylvania · US

Funding

Osteopontin in Oxidative Injury and Airway Remodeling in AsthmaK23HL083099 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARJOMANDI, MEHRDAD · 2006 to 2010
$744k
NHLBI NIH HHS K23 HL083099
6 · The paper itself

Abstract

backgroundThe increase in lung cancer screening is intensifying the need for a noninvasive test to characterize the many indeterminate pulmonary nodules (IPN) discovered. Correctly identifying non-cancerous nodules is needed to reduce overdiagnosis and overtreatment. Alternatively, early identification of malignant nodules may represent a potentially curable form of lung cancer.

objectiveTo develop and validate a plasma-based multiplexed protein assay for classifying IPN by discriminating between those with a lung cancer diagnosis established pathologically and those found to be clinically and radiographically stable for at least one year.

methodsUsing a novel technology, we developed assays for plasma proteins associated with lung cancer into a panel for characterizing the risk that an IPN found on chest imaging is malignant. The assay panel was evaluated with a cohort of 277 samples, all from current smokers with an IPN 4-30 mm. Subjects were divided into training and test sets to identify a Support Vector Machine (SVM) model for risk classification containing those proteins and clinical factors that added discriminatory information to the Veteran's Affairs (VA) Clinical Factors Model. The algorithm was then evaluated in an independent validation cohort.

resultsAmong the 97 validation study subjects, 68 were grouped as having intermediate risk by the VA model of which the SVM model correctly identified 44 (65%) of these intermediate-risk samples as low (n=16) or high risk (n=28). The SVM model negative predictive value (NPV) was 94% and its sensitivity was 94%.

conclusionThe performance of the novel plasma protein biomarker assay supports its use as a noninvasive risk assessment aid for characterizing IPN. The high NPV of the SVM model suggests its application as a rule-out test to increase the confidence of providers to avoid aggressive interventions for their patients for whom the VA model result is an inconclusive, intermediate risk.

Indexed as

biomarkersdiagnosislung cancerpulmonary nodulesrisk models

Identifiers

PMID32913898
PMCPMC7480946
OpenAlexW2946311059

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.