Evidence map›Paper›PMID 32913311›Full record

ArticleScientific reports2020

Identification of effector candidate genes of Rhizoctonia solani AG-1 IA expressed during infection in Brachypodium distachyon.

Sobhy S H Abdelsalam, Yusuke Kouzai, Megumi Watanabe, Komaki Inoue, Hidenori Matsui, Mikihiro Yamamoto, Yuki Ichinose, Kazuhiro Toyoda, Seiji Tsuge, Keiichi Mochida and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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  6. Distinct Infection Mechanisms ofLife (Basel, Switzerland) · 2025
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  8. Secreted Glycosyltransferase RsIA_GT ofPathogens (Basel, Switzerland) · 2022
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  9. Surveillance of Pathogenicity ofLife (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Sobhy S H AbdelsalamGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Yusuke KouzaiBioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Megumi WatanabeGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Komaki InoueBioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Hidenori MatsuiGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Mikihiro YamamotoGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Yuki IchinoseGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Kazuhiro ToyodaGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Seiji TsugeGraduate School of Agriculture, Kyoto Prefectural University, Kyoto, Japan.
Keiichi MochidaBioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Yoshiteru NoutoshiGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan. noutoshi@okayama-u.ac.jp.
Okayama University · JPRIKEN Center for Sustainable Resource Science · JPKihara Institute for Biological Research · JPKyoto Prefectural University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizoctonia solani is a necrotrophic phytopathogen belonging to basidiomycetes. It causes rice sheath blight which inflicts serious damage in rice production. The infection strategy of this pathogen remains unclear. We previously demonstrated that salicylic acid-induced immunity could block R. solani AG-1 IA infection in both rice and Brachypodium distachyon. R. solani may undergo biotrophic process using effector proteins to suppress host immunity before necrotrophic stage. To identify pathogen genes expressed at the early infection process, here we developed an inoculation method using B. distachyon which enables to sample an increased amount of semi-synchronous infection hyphae. Sixty-one R. solani secretory effector-like protein genes (RsSEPGs) were identified using in silico approach with the publicly available gene annotation of R. solani AG-1 IA genome and our RNA-sequencing results obtained from hyphae grown on agar medium. Expression of RsSEPGs was analyzed at 6, 10, 16, 24, and 32 h after inoculation by a quantitative reverse transcription-polymerase chain reaction and 52 genes could be detected at least on a single time point tested. Their expressions showed phase-specific patterns which were classified into 6 clusters. The 23 RsSEPGs in the cluster 1-3 and 29 RsSEPGs in the cluster 4-6 are expected to be involved in biotrophic and necrotrophic interactions, respectively.

Indexed as

Genes, FungalBrachypodiumComputer SimulationGene Expression Regulation, FungalMolecular Sequence AnnotationReverse Transcriptase Polymerase Chain ReactionRhizoctoniaSequence Analysis, RNA

Identifiers

PMID32913311
PMCPMC7483729
OpenAlexW3083791678

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.