Evidence map›Paper›PMID 32913098›Full record

ArticleScience (New York, N.Y.)2020

The GTEx Consortium atlas of genetic regulatory effects across human tissues.

GTEx Consortium

Open access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3,453 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3,453citing papers in PubMed, 7 pooled it
233.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3,453 citing papers in PubMed, 7 syntheses or guidelines pooled it, 5,473 citations in OpenAlex.

  1. Pooled it
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  8. Article
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  10. Ancient DNA and Human Physiology.Physiology (Bethesda, Md.) · 2026
    Review
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3,393 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

1 author at 3 institutions in 2 countries.

GTEx Consortium
Massachusetts General Hospital · USUniversity of Chicago · USKing's College London · GB

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
New York Center for Collaborative Research In Common Disease Genomics: Genome Aggregation and Joint Variant Calling for CCDG Freeze2UM1HG008901 · NHGRI · NEW YORK GENOME CENTER · PI MANIATIS, THOMAS P, WIGLER, MICHAEL H · 2016 to 2020
$56.6M
The UCSC Genome BrowserU41HG002371 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KENT, WILLIAM JAMES · 2012 to 2021
$36.6M
INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Scripps Translational Science InstituteUL1TR002550 · NCATS · SCRIPPS RESEARCH INSTITUTE, THE · PI TOPOL, ERIC JEFFREY · 2018 to 2022
$28.9M
Pilot and Feasibility ProgramP30DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI Matthew J Brady · 2013 to 2026
$20.9M
Genome analysis: statistical methods and applicationsR01HG002585 · NHGRI · UNIVERSITY OF WASHINGTON · PI MATTHEW STEPHENS · 2002 to 2026
$8.4M
Structurally complex genome loci in human populations and human phenotypesR01HG006855 · NHGRI · HARVARD MEDICAL SCHOOL · PI Steven Andrew McCarroll · 2012 to 2026
$8.2M
A portal and integrative collaborative analysis platform for GTExU41HG009494 · NHGRI · BROAD INSTITUTE, INC. · PI ARDLIE, KRISTIN, GETZ, GAD A · 2017 to 2021
$5.2M
Statistical models for fine-mapping and interpretation of schizophrenia-associated lociR01MH106842 · NIMH · NEW YORK GENOME CENTER · PI BUSSEMAKER, HARMEN J, LAPPALAINEN, TUULI · 2015 to 2024
$5.0M
UNDERSTANDING CELLULAR AND TRANSCRIPTIONAL REGULATORY CHANGES IN HUMAN AGINGR01AG057422 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI GREALLY, JOHN, LAPPALAINEN, TUULI · 2018 to 2022
$4.5M
Strategic mapping of tissue and population methylation for mental health researchU01MH104393 · NIMH · JOHNS HOPKINS UNIVERSITY · PI FEINBERG, ANDREW P. · 2014 to 2016
$3.9M
CCR NIH HHS HHSN261200800001CNCATS NIH HHS UL1 TR001873NCATS NIH HHS UL1 TR002550NCI NIH HHS HHSN261200800001ENCI NIH HHS R01 CA229618NHGRI NIH HHS F31 HG010580NHGRI NIH HHS F32 HG009987NHGRI NIH HHS K99 HG009916NHGRI NIH HHS R01 HG002585NHGRI NIH HHS R01 HG006855NHGRI NIH HHS R01 HG008150NHGRI NIH HHS R01 HG010067NHGRI NIH HHS R01 HG010480NHGRI NIH HHS R01 HG010731NHGRI NIH HHS R01 HG011138NHGRI NIH HHS R35 HG010718NHGRI NIH HHS T32 HG000044NHGRI NIH HHS U01 HG007593NHGRI NIH HHS U01 HG007598NHGRI NIH HHS U41 HG002371NHGRI NIH HHS U41 HG009494NHGRI NIH HHS UM1 HG008901NHLBI NIH HHS HHSN268201000029CNHLBI NIH HHS R01 HL133218NHLBI NIH HHS R01 HL142028NIA NIH HHS R01 AG057422NIDA NIH HHS R01 DA006227NIDDK NIH HHS P30 DK020595NIDDK NIH HHS T32 DK110919NIGMS NIH HHS R01 GM122924NIGMS NIH HHS R01 GM124486NIMH NIH HHS R01 MH090936NIMH NIH HHS R01 MH090937NIMH NIH HHS R01 MH090941NIMH NIH HHS R01 MH090951NIMH NIH HHS R01 MH101814NIMH NIH HHS R01 MH101822NIMH NIH HHS R01 MH106842NIMH NIH HHS R01 MH107666NIMH NIH HHS R01 MH109905NIMH NIH HHS U01 MH104393
6 · The paper itself

Abstract

The Genotype-Tissue Expression (GTEx) project was established to characterize genetic effects on the transcriptome across human tissues and to link these regulatory mechanisms to trait and disease associations. Here, we present analyses of the version 8 data, examining 15,201 RNA-sequencing samples from 49 tissues of 838 postmortem donors. We comprehensively characterize genetic associations for gene expression and splicing in cis and trans, showing that regulatory associations are found for almost all genes, and describe the underlying molecular mechanisms and their contribution to allelic heterogeneity and pleiotropy of complex traits. Leveraging the large diversity of tissues, we provide insights into the tissue specificity of genetic effects and show that cell type composition is a key factor in understanding gene regulatory mechanisms in human tissues.

Indexed as

Gene Expression RegulationQuantitative Trait LociDatasets as TopicDiseaseFemaleGenome-Wide Association StudyHumansMaleOrgan SpecificitySequence Analysis, RNA

Identifiers

PMID32913098
PMCPMC7737656
OpenAlexW3133859624

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.