Evidence map›Paper›PMID 32913054›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM.

Feng Wang, Yanxin Liu, Zanlin Yu, Sam Li, Shengjie Feng, Yifan Cheng, David A Agard

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 123 citations in OpenAlex.

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  13. Capturing the native structure of membrane proteins using vesicles.Proceedings of the National Academy of Sciences of the United States of America · 2025
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Feng WangDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94143.ORCID 0000-0002-1233-2745
Yanxin LiuDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94143.ORCID 0000-0002-2253-3698
Zanlin YuDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94143.ORCID 0000-0001-8381-8788
Sam LiDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94143.
Shengjie FengDepartment of Physiology, University of California, San Francisco, CA 94158.
Yifan ChengDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94143.
David A AgardDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94143; agard@msg.ucsf.edu.ORCID 0000-0003-3512-695X
University of California, San Francisco · USHoward Hughes Medical Institute · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
RESEARCH PROJECT 2U19AI135990 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JEFFERY S COX · 2018 to 2026
$21.4M
The Psychiatric Cell Map Initiative: Connecting Genomics, Subcellular Networks, and Higher Order PhenotypesU01MH115747 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAMPMANN, MARTIN, KROGAN, NEVAN J · 2018 to 2022
$19.6M
Using Networks to Seed Hierarchical Whole-cell Models of CancerU54CA209891 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI IDEKER, TREY · 2017 to 2021
$10.9M
Structure, States and Transition in ABC Transporters pp360-431P01GM111126 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2015 to 2019
$9.8M
Structure & Mechanism: microtubule nucleation, centrosomes, phage cytoskeletonR35GM118099 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGARD, DAVID A. · 2016 to 2022
$3.6M
Structures and gating mechanisms of TRP ion channelsR01GM098672 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2011 to 2018
$2.6M
Acquisition of an electron microscope for high-resolution single particle cryo-EMS10OD021741 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2016 to 2016
$2.0M
Linux cluster for near atomic resolution single particle cryo-EMS10OD020054 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2015 to 2015
$456k
Howard Hughes Medical InstituteNCI NIH HHS U54 CA209891NIAID NIH HHS U19 AI135990NIGMS NIH HHS P50 GM082250NIGMS NIH HHS R01 GM098672NIGMS NIH HHS R35 GM118099NIH HHS S10 OD020054NIH HHS S10 OD021741NIMH NIH HHS U01 MH115747
6 · The paper itself

Abstract

Affinity grids have great potential to facilitate rapid preparation of even quite impure samples in single-particle cryo-electron microscopy (EM). Yet despite the promising advances of affinity grids over the past decades, no single strategy has demonstrated general utility. Here we chemically functionalize cryo-EM grids coated with mostly one or two layers of graphene oxide to facilitate affinity capture. The protein of interest is tagged using a system that rapidly forms a highly specific covalent bond to its cognate catcher linked to the grid via a polyethylene glycol (PEG) spacer. Importantly, the spacer keeps particles away from both the air-water interface and the graphene oxide surface, protecting them from potential denaturation and rendering them sufficiently flexible to avoid preferential sample orientation concerns. Furthermore, the PEG spacer successfully reduces nonspecific binding, enabling high-resolution reconstructions from a much cruder lysate sample.

Indexed as

GraphiteCryoelectron MicroscopyPolyethylene GlycolsSpecimen Handlinggraphene oxideGraphitePolyethylene Glycolsaffinity gridcryo-EMgraphene oxidesingle-particle reconstruction

Identifiers

PMID32913054
PMCPMC7533693
OpenAlexW3084848063

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.