Evidence map›Paper›PMID 32912862›Full record

ArticleDiabetes2020

In Vivo Reporter Assays Uncover Changes in Enhancer Activity Caused by Type 2 Diabetes-Associated Single Nucleotide Polymorphisms.

Ana Eufrásio, Chiara Perrod, Fábio J Ferreira, Marta Duque, Mafalda Galhardo, José Bessa

Open access · bronzeAbstract read
In one paragraph

Article in Diabetes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ana Eufrásioi3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, and IBMC-Instituto de Biologia Celular e Molecular, Porto, Portugal.
Chiara Perrodi3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, and IBMC-Instituto de Biologia Celular e Molecular, Porto, Portugal.
Fábio J Ferreirai3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, and IBMC-Instituto de Biologia Celular e Molecular, Porto, Portugal.
Marta Duquei3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, and IBMC-Instituto de Biologia Celular e Molecular, Porto, Portugal.
Mafalda Galhardoi3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, and IBMC-Instituto de Biologia Celular e Molecular, Porto, Portugal.
José Bessai3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, and IBMC-Instituto de Biologia Celular e Molecular, Porto, Portugal jose.bessa@ibmc.up.pt.ORCID 0000-0002-8591-7138
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many single nucleotide polymorphisms (SNPs) associated with type 2 diabetes overlap with putative endocrine pancreatic enhancers, suggesting that these SNPs modulate enhancer activity and, consequently, gene expression. We performed in vivo mosaic transgenesis assays in zebrafish to quantitatively test the enhancer activity of type 2 diabetes-associated loci. Six out of 10 tested sequences are endocrine pancreatic enhancers. The risk variant of two sequences decreased enhancer activity, while in another two incremented it. One of the latter (rs13266634) locates in an

Indexed as

Polymorphism, Single NucleotideAnimalsAnimals, Genetically ModifiedDiabetes Mellitus, Type 2Embryo, NonmammalianGene Expression RegulationGenes, ReporterLuminescent ProteinsRed Fluorescent ProteinZebrafishZinc Transporter 8Luminescent ProteinsRed Fluorescent ProteinZinc Transporter 8

Identifiers

PMID32912862
PMCPMC7679775
OpenAlexW3085206899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.