ArticleGenome biology2020
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.
Article in Genome biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2,496 papers.
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2,496 citing papers in PubMed.
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- Evolutionary dynamics of the chloroplast genome in Abutilon (Malvoideae, Malvaceae).BMC plant biology · 2026Article
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7 authors.
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Abstract
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from whole genome sequencing data. It recruits organelle-associated reads using a modified "baiting and iterative mapping" approach, conducts de novo assembly, filters and disentangles the assembly graph, and produces all possible configurations of circular organelle genomes. For 50 published plant datasets, we are able to reassemble the circular plastomes from 47 datasets using GetOrganelle. GetOrganelle assemblies are more accurate than published and/or NOVOPlasty-reassembled plastomes as assessed by mapping. We also assemble complete mitochondrial genomes using GetOrganelle. GetOrganelle is freely released under a GPL-3 license ( https://github.com/Kinggerm/GetOrganelle ).
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