Evidence map›Paper›PMID 32911607›Full record

ArticleMolecules (Basel, Switzerland)2020

Identification of Novel Src Inhibitors: Pharmacophore-Based Virtual Screening, Molecular Docking and Molecular Dynamics Simulations.

Yi Zhang, Ting-Jian Zhang, Shun Tu, Zhen-Hao Zhang, Fan-Hao Meng

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Synthesis, kinetic studies andJournal of enzyme inhibition and medicinal chemistry · 2023
    Article
  8. Article
  9. Article
  10. Biochemical Targets and Molecular Mechanism of Matrine against Aging.International journal of molecular sciences · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Discovery of potent and noncovalent KRASFrontiers in pharmacology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yi ZhangSchool of Pharmacy, China Medical University, Shenyang 110122, China.
Ting-Jian ZhangSchool of Pharmacy, China Medical University, Shenyang 110122, China.
Shun TuSchool of Pharmacy, China Medical University, Shenyang 110122, China.
Zhen-Hao ZhangSchool of Pharmacy, China Medical University, Shenyang 110122, China.
Fan-Hao MengSchool of Pharmacy, China Medical University, Shenyang 110122, China.ORCID 0000-0002-1331-2164
China Medical University · CN

Funding

the National Natural Science Foundation of China 81803355 and 81573687
6 · The paper itself

Abstract

Src plays a crucial role in many signaling pathways and contributes to a variety of cancers. Therefore, Src has long been considered an attractive drug target in oncology. However, the development of Src inhibitors with selectivity and novelty has been challenging. In the present study, pharmacophore-based virtual screening and molecular docking were carried out to identify potential Src inhibitors. A total of 891 molecules were obtained after pharmacophore-based virtual screening, and 10 molecules with high docking scores and strong interactions were selected as potential active molecules for further study. Absorption, distribution, metabolism, elimination and toxicity (ADMET) property evaluation was used to ascertain the drug-like properties of the obtained molecules. The proposed inhibitor-protein complexes were further subjected to molecular dynamics (MD) simulations involving root-mean-square deviation and root-mean-square fluctuation to explore the binding mode stability inside active pockets. Finally, two molecules (ZINC3214460 and ZINC1380384) were obtained as potential lead compounds against Src kinase. All these analyses provide a reference for the further development of novel Src inhibitors.

Indexed as

Drug DiscoveryMolecular Docking SimulationMolecular Dynamics SimulationBinding SitesDatabases, PharmaceuticalDrug Evaluation, PreclinicalHumansLigandsMolecular ConformationMolecular StructureProtein BindingProtein Interaction Domains and MotifsProtein Kinase InhibitorsQuantitative Structure-Activity RelationshipReproducibility of Resultssrc-Family KinasesLigandsProtein Kinase Inhibitorssrc-Family Kinasesmolecular dockingmolecular dynamics simulationspharmacophore modelSrc inhibitorsvirtual screening

Identifiers

PMID32911607
PMCPMC7571137
OpenAlexW3083575063

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.