Evidence map›Paper›PMID 32909104›Full record

ArticleJournal of mathematical biology2020

Caterpillars on three and four leaves are sufficient to reconstruct binary normal networks.

Simone Linz, Charles Semple

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of mathematical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Clustering systems of phylogenetic networks.Theory in biosciences = Theorie in den Biowissenschaften · 2023
    Article
  3. Review
  4. Article
  5. Trinets encode orchard phylogenetic networks.Journal of mathematical biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Simone LinzSchool of Computer Science, University of Auckland, Auckland, New Zealand.ORCID http://orcid.org/0000-0003-0862-9594
Charles SempleSchool of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand. charles.semple@canterbury.ac.nz.ORCID http://orcid.org/0000-0002-4315-4195

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While every rooted binary phylogenetic tree is determined by its set of displayed rooted triples, such a result does not hold for an arbitrary rooted binary phylogenetic network. In particular, there exist two non-isomorphic rooted binary temporal normal networks that display the same set of rooted triples. Moreover, without any structural constraint on the rooted phylogenetic networks under consideration, similarly negative results have also been established for binets and trinets which are rooted subnetworks on two and three leaves, respectively. Hence, in general, piecing together a rooted phylogenetic network from such a set of small building blocks appears insurmountable. In contrast to these results, in this paper, we show that a rooted binary normal network is determined by its sets of displayed caterpillars (particular type of subtrees) on three and four leaves. The proof is constructive and realises a polynomial-time algorithm that takes the sets of caterpillars on three and four leaves displayed by a rooted binary normal network and, up to isomorphism, reconstructs this network.

Indexed as

AlgorithmsPlant LeavesAnimalsLarvaLepidopteraModels, GeneticPhylogenyNormal networksQuadsRooted triples

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.