Evidence map›Paper›PMID 32908316›Full record

ArticleNature structural & molecular biology2020

SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation.

Katharina Schubert, Evangelos D Karousis, Ahmad Jomaa, Alain Scaiola, Blanca Echeverria, Lukas-Adrian Gurzeler, Marc Leibundgut, Volker Thiel, Oliver Mühlemann, Nenad Ban

Erratum issuedOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 398 papers.

0numbers the graph read from it
0cells of the map it votes in
398citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

398 citing papers in PubMed, 628 citations in OpenAlex.

  1. Article
  2. Article
  3. The diverse functions of viral microproteins.bioRxiv : the preprint server for biology · 2026
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  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. A ribosomal kinetic checkpoint governs selective mRNA recruitment.bioRxiv : the preprint server for biology · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. SARS-CoV-2 and MERS-CoV disrupt host protein synthesis via nsp1 with differential effects on the integrated stress response.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  20. Review

338 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Katharina Schubert *Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-3832-7730
Evangelos D Karousis *Department of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.
Ahmad JomaaDepartment of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-4786-934X
Alain ScaiolaDepartment of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-3233-3910
Blanca EcheverriaDepartment of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.
Lukas-Adrian GurzelerDepartment of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0002-1463-2207
Marc LeibundgutDepartment of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.
Volker ThielInstitute of Virology and Immunology, Bern, Switzerland.ORCID http://orcid.org/0000-0002-5783-0887
Oliver MühlemannDepartment of Chemistry and Biochemistry, University of Bern, Bern, Switzerland. oliver.muehlemann@dcb.unibe.ch.ORCID http://orcid.org/0000-0003-0657-1368
Nenad BanDepartment of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland. ban@mol.biol.ethz.ch.ORCID http://orcid.org/0000-0002-9527-210X
ETH Zurich · CHUniversity of Bern · CH

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 138262Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 173085Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 182341Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 182831
6 · The paper itself

Abstract

The SARS-CoV-2 non-structural protein 1 (Nsp1), also referred to as the host shutoff factor, suppresses host innate immune functions. By combining cryo-electron microscopy and biochemistry, we show that SARS-CoV-2 Nsp1 binds to the human 40S subunit in ribosomal complexes, including the 43S pre-initiation complex and the non-translating 80S ribosome. The protein inserts its C-terminal domain into the mRNA channel, where it interferes with mRNA binding. We observe translation inhibition in the presence of Nsp1 in an in vitro translation system and in human cells. Based on the high-resolution structure of the 40S-Nsp1 complex, we identify residues of Nsp1 crucial for mediating translation inhibition. We further show that the full-length 5' untranslated region of the genomic viral mRNA stimulates translation in vitro, suggesting that SARS-CoV-2 combines global inhibition of translation by Nsp1 with efficient translation of the viral mRNA to allow expression of viral genes.

Indexed as

Protein Biosynthesis5' Untranslated RegionsBetacoronavirusCryoelectron MicroscopyHEK293 CellsHeLa CellsHost-Pathogen InteractionsHumansModels, MolecularMutationProtein ConformationProtein DomainsRecombinant ProteinsRibosome Subunits, Small, EukaryoticRNA, MessengerSARS-CoV-25' Untranslated RegionsORF1ab polyprotein, SARS-CoV-2Recombinant ProteinsRNA, MessengerViral Nonstructural Proteins

Identifiers

PMID32908316
OpenAlexW3083872269

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.