ArticleNature genetics2020
The UCSC SARS-CoV-2 Genome Browser.
Abstract read
In one paragraph
Article in Nature genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.
0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
62 citing papers in PubMed.
- Vector-borne diseases and their role in COVID-19 dynamics and death rates: focus on India.Folia microbiologica · 2025Article
- CCR4-NOT Transcription Complex Subunit 7 (CNOT7) Protein and Leukocyte-Associated Immunoglobulin-like Receptor-1 in Breast Cancer Progression: Clinical Mechanistic Insights and In Silico Therapeutic Potential.International journal of molecular sciences · 2025Article
- Computer-aided molecular and biological-immune modeling of illicium verum bioactive compounds employing the Egyptian Nile snail Biomphalaria alexandrina as a paradigm.Journal of computer-aided molecular design · 2025Article
- Preparation of a Brucella multiepitope fusion protein based on bioinformatics and its application in serological diagnosis of human brucellosis.Scientific reports · 2025Article
- "Outlaw" mutations in quasispecies of SARS-CoV-2 inhibit replication.Emerging microbes & infections · 2024Article
- Article
- SARS-CoV-2 rapidly evolves lineage-specific phenotypic differences when passaged repeatedly in immune-naïve mice.Communications biology · 2024Article
- Real-time PCR assays that detect genes for botulinum neurotoxin A-G subtypes.Frontiers in microbiology · 2024Article
- Genetic diversity and genomic epidemiology of SARS-CoV-2 during the first 3 years of the pandemic in Morocco: comprehensive sequence analysis, including the unique lineage B.1.528 in Morocco.Access microbiology · 2024Article
- Monocytes subsets altered distribution and dysregulated plasma hsa-miR-21-5p and hsa-miR-155-5p in HCV-linked liver cirrhosis progression to hepatocellular carcinoma.Journal of cancer research and clinical oncology · 2023Article
- Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single-cell RNA sequencing.Microbiology spectrum · 2023Article
- COWID: an efficient cloud-based genomics workflow for scalable identification of SARS-COV-2.Briefings in bioinformatics · 2023Article
- Review
- A microRNA Arising from the Negative Strand of SARS-CoV-2 Genome Targets FOS to Reduce AP-1 Activity.Non-coding RNA · 2023Article
- Web Resources for SARS-CoV-2 Genomic Database, Annotation, Analysis and Variant Tracking.Viruses · 2023Review
- A computational map of the human-SARS-CoV-2 protein-RNA interactome predicted at single-nucleotide resolution.NAR genomics and bioinformatics · 2023Article
- Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single cell RNA sequencing.bioRxiv : the preprint server for biology · 2023Article
- Diagnostic Significance of hsa-miR-21-5p, hsa-miR-192-5p, hsa-miR-155-5p, hsa-miR-199a-5p Panel and Ratios in Hepatocellular Carcinoma on Top of Liver Cirrhosis in HCV-Infected Patients.International journal of molecular sciences · 2023Article
- Applying the digital data and the bioinformatics tools in SARS-CoV-2 research.Computational and structural biotechnology journal · 2023Review
- Article
2 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
20 authors.
Jason D FernandesGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Angie S HinrichsGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Hiram ClawsonGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Jairo Navarro GonzalezGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Brian T LeeGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Luis R NassarGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Brian J RaneyGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Kate R RosenbloomGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0001-8799-4826
Santrupti NerliGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Arjun A RaoImmunoX Initiative, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-4480-3190
Daniel SchmelterGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Alastair FyfeGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Nathan MauldingGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Ann S ZweigGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Todd M LoweGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Manuel AresMolecular, Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0002-2552-9168
Russ Corbet-DetigGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
W James KentGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
David HausslerGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA. maxh@ucsc.edu.ORCID http://orcid.org/0000-0003-1533-4575
Maximilian HaeusslerGenomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA. haussler@ucsc.edu.ORCID http://orcid.org/0000-0001-8721-8253
Funding
The UCSC Genome BrowserU41HG002371 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KENT, WILLIAM JAMES · 2012 to 2021
$36.6MA Unified Atlas of Dynamic tRNA FunctionR01HG006753 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI LOWE, TODD MICHAEL · 2012 to 2022
$4.6MOrigins, Functional, and Evolutionary Consequences of Genomic VariationR35GM128932 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Russell Corbett-Detig · 2018 to 2026
$3.2MGenomic Measurement of Alternative SplicingR01GM084317 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI ARES, MANUEL, YEO, EUGENE WEI-MING · 2009 to 2012
$1.8MCenter for Information Technology Research in the Interest of Society (CITRIS) 2020-0000000020NHGRI NIH HHS R01 HG006753NHGRI NIH HHS U41 HG002371NIGMS NIH HHS R01 GM084317NIGMS NIH HHS R35 GM128932U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 5U41HG002371U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM128932
Abstract
PubMed holds no abstract for this paper.
Indexed as
BetacoronavirusCoronavirus InfectionsCOVID-19Databases, GeneticGenome, ViralHumansInternetPandemicsPneumonia, ViralSARS-CoV-2
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.