Evidence map›Paper›PMID 32907956›Full record

ArticlemSphere2020

Mimicry Embedding Facilitates Advanced Neural Network Training for Image-Based Pathogen Detection.

Artur Yakimovich, Moona Huttunen, Jerzy Samolej, Barbara Clough, Nagisa Yoshida, Serge Mostowy, Eva-Maria Frickel, Jason Mercer

Abstract read
In one paragraph

Article in mSphere, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Artur YakimovichMRC-Laboratory for Molecular Cell Biology, University College London, London, United Kingdom a.yakimovich@ucl.ac.uk jason.mercer@ucl.ac.uk.
Moona HuttunenMRC-Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Jerzy SamolejMRC-Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Barbara CloughInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.
Nagisa YoshidaHost-Toxoplasma Interaction Laboratory, The Francis Crick Institute, London, United Kingdom.
Serge MostowyDepartment of Infection Biology, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Eva-Maria FrickelInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.
Jason MercerMRC-Laboratory for Molecular Cell Biology, University College London, London, United Kingdom a.yakimovich@ucl.ac.uk jason.mercer@ucl.ac.uk.

Funding

Medical Research Council MC_UP_1202/12Medical Research Council MC_UU_00012/1Medical Research Council MC_UU_00012/7Medical Research Council MR/K015826/1MRC MR/K015826/1Wellcome Trust FC001076
6 · The paper itself

Abstract

The use of deep neural networks (DNNs) for analysis of complex biomedical images shows great promise but is hampered by a lack of large verified data sets for rapid network evolution. Here, we present a novel strategy, termed "mimicry embedding," for rapid application of neural network architecture-based analysis of pathogen imaging data sets. Embedding of a novel host-pathogen data set, such that it mimics a verified data set, enables efficient deep learning using high expressive capacity architectures and seamless architecture switching. We applied this strategy across various microbiological phenotypes, from superresolved viruses to

Indexed as

Deep LearningHost-Pathogen InteractionsNeural Networks, ComputerAnimalsArtificial IntelligenceImage Processing, Computer-AssistedMicroscopyToxoplasmaVaccinia virusZebrafishcapsule networksdeep learningsuperresolution microscopyToxoplasma gondiitransfer learningvaccinia viruszebrafish

Identifiers

PMID32907956
PMCPMC7485691

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.