ArticleFrontiers in plant science2020
Combining a New Exome Capture Panel With an Effective varBScore Algorithm Accelerates BSA-Based Gene Cloning in Wheat.
Article in Frontiers in plant science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 62 citations in OpenAlex.
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- Population Genomics Reveals Distinct Lineage of the Asian Soybean Rust Fungus Phakopsora pachyrhizi in the United States of America Unrelated to Brazilian Populations.Molecular plant pathology · 2025Article
- Molecular characterization and validation of adult-plant stripe rust resistance genes in Yunnan hulled wheat (Triticum aestivum ssp. yunnanense King).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- A TaSnRK1α-TaCAT2 model mediates resistance to Fusarium crown rot by scavenging ROS in common wheat.Nature communications · 2025Article
- Identification of stripe rust resistance gene YrBDT in Chinese landrace wheat Baidatou using BSE-seq and BSR-seq.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- A novel regulator of wheat tilleringMolecular breeding : new strategies in plant improvement · 2024Article
- Identification of candidate genes for adult plant stripe rust resistance transferred from Aegilops ventricosa 2NTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Identification and functional analysis of a chromosome 2D fragment harboring TaFPF1 gene with the potential for yield improvement using a late heading wheat mutant.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genome-Wide Association Study of Preharvest Sprouting in Wheat.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Mapping QTL conferring flag leaf senescence in durum wheat cultivars.Molecular breeding : new strategies in plant improvement · 2023Article
- Genetic mapping and analysis of candidate leaf color genes in common winter wheat (Molecular breeding : new strategies in plant improvement · 2023Article
- GSK3 phosphorylates and regulates the Green Revolution protein Rht-B1b to reduce plant height in wheat.The Plant cell · 2023Article
- Identification of a suppressor for the wheat stripe rust resistance gene Yr81 in Chinese wheat landrace Dahongpao.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Identification of candidate gene for the defective kernel phenotype using bulked segregant RNA and exome capture sequencing methods in wheat.Frontiers in plant science · 2023Article
- Mapping and characterization of a novel adult-plant leaf rust resistance gene LrYang16G216 via bulked segregant analysis and conventional linkage method.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Agronomic Trait Analysis and Genetic Mapping of a New Wheat Semidwarf GeneInternational journal of molecular sciences · 2022Article
- Discovery of stripe rust resistance with incomplete dominance in wild emmer wheat using bulked segregant analysis sequencing.Communications biology · 2022Article
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Authors and funding
13 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The discovery of functional genes underlying agronomic traits is of great importance for wheat improvement. Here we designed a new wheat exome capture probe panel based on IWGSC RefSeq v1.0 genome sequence information and developed an effective algorithm, varBScore, that can sufficiently reduce the background noise in gene mapping and identification. An effective method, termed bulked segregant exome capture sequencing (BSE-Seq) for identifying causal mutations or candidate genes was established by combining the use of a newly designed wheat exome capture panel, sequencing of bulked segregant pools from segregating populations, and the robust algorithm varBScore. We evaluated the effectiveness of varBScore on SNP calling using the published dataset for mapping and cloning the yellow rust resistance gene
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