Evidence map›Paper›PMID 32903488›Full record

ArticleFrontiers in physiology2020

Extracting Insights From Temporal Data by Integrating Dynamic Modeling and Machine Learning.

Richard Ballweg, Kristen A Engevik, Marshall H Montrose, Eitaro Aihara, Tongli Zhang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in physiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Richard BallwegDepartment of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, United States.
Kristen A EngevikDepartment of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, United States.
Marshall H MontroseDepartment of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, United States.
Eitaro AiharaDepartment of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, United States.
Tongli ZhangDepartment of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, United States.
University of Cincinnati Medical Center · US

Funding

Mechanisms of essential calcium signaling during gastric epithelial wound healingR01DK102551 · NIDDK · UNIVERSITY OF CINCINNATI · PI MONTROSE, MARSHALL H · 2015 to 2018
$1.4M
(PQ6) Roles of circadian rhythms in tumor developmentR21CA227379 · NCI · UNIVERSITY OF CINCINNATI · PI HONG, CHRISTIAN I · 2018 to 2019
$378k
Elucidating the mechanism behind TFF2-mediated gastric restitutionF31DK115126 · NIDDK · UNIVERSITY OF CINCINNATI · PI ENGEVIK, KRISTEN · 2017 to 2018
$77k
NCI NIH HHS R21 CA227379NIDDK NIH HHS F31 DK115126NIDDK NIH HHS R01 DK102551
6 · The paper itself

Abstract

Biological processes are dynamic. As a result, temporal analyses are necessary to fully understand the complex interactions that occurs within these systems. One example of a multifaceted biological process is restitution: the initial step in complex wound repair. Restitution is a dynamic process that depends on an elegant orchestration between damaged cells and their intact neighbors. Such orchestration enables the quick repair of the damaged area, which is essential to preserve epithelial integrity and prevent further injury. High quality dynamic data of the cellular and molecular events that make up the gastric restitution process has been documented. However, comprehensive dynamic models that connect all relevant molecular interactions to cellular behaviors are challenging to construct and experimentally validate. In order to efficiently provide feedback to ongoing experimental work, we have integrated dynamical modeling and machine learning to efficiently extract data-driven insights without incorporating detailed mechanisms. Dynamical models convert time course data into a set of static features, which are then subjected to machine learning analysis. The integrated analysis provides data-driven insights into how repair might be regulated in individual gastric organoids. We have provided a "

Indexed as

actincomputational modelgastric epitheliumorganoidsrestitution

Identifiers

PMID32903488
PMCPMC7435055
OpenAlexW3048733766

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.