Evidence map›Paper›PMID 32902791›Full record

ArticlePlant molecular biology2022

Field transcriptome analysis reveals a molecular mechanism for cassava-flowering in a mountainous environment in Southeast Asia.

Hiroki Tokunaga, Do Thi Nhu Quynh, Nguyen Hai Anh, Pham Thi Nhan, Akihiro Matsui, Satoshi Takahashi, Maho Tanaka, Ngo Minh Anh, Nguyen Van Dong, Le Huy Ham and 13 more

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Article in Plant molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 4 institutions in 5 countries.

Hiroki TokunagaCenter for Sustainable Resource Science, RIKEN, Kanagawa, Japan. hiroki.tokunaga@riken.jp.ORCID http://orcid.org/0000-0001-7316-0791
Do Thi Nhu QuynhInternational Laboratory for Cassava Molecular Breeding (ILCMB), AGI, Hanoi, Vietnam.
Nguyen Hai AnhInternational Laboratory for Cassava Molecular Breeding (ILCMB), AGI, Hanoi, Vietnam.
Pham Thi NhanHung Loc Agricultural Research Center (HLARC), Dong Nai, Vietnam.
Akihiro MatsuiCenter for Sustainable Resource Science, RIKEN, Kanagawa, Japan.
Satoshi TakahashiCenter for Sustainable Resource Science, RIKEN, Kanagawa, Japan.
Maho TanakaCenter for Sustainable Resource Science, RIKEN, Kanagawa, Japan.
Ngo Minh AnhInternational Laboratory for Cassava Molecular Breeding (ILCMB), AGI, Hanoi, Vietnam.
Nguyen Van DongInternational Laboratory for Cassava Molecular Breeding (ILCMB), AGI, Hanoi, Vietnam.
Le Huy HamInternational Laboratory for Cassava Molecular Breeding (ILCMB), AGI, Hanoi, Vietnam.
Asuka HigoKihara Institute for Biological Research, Yokohama City University, Kanagawa, Japan.
Truong Minh HoaHung Loc Agricultural Research Center (HLARC), Dong Nai, Vietnam.
Manabu IshitaniInternational Laboratory for Cassava Molecular Breeding (ILCMB), AGI, Hanoi, Vietnam.
Nguyen Ba Nhat MinhHung Loc Agricultural Research Center (HLARC), Dong Nai, Vietnam.
Nguyen Huu HyHung Loc Agricultural Research Center (HLARC), Dong Nai, Vietnam.
Pao SreanUniversity of Battambang (UBB), Battambang, Cambodia.
Vu Anh ThuCenter for Sustainable Resource Science, RIKEN, Kanagawa, Japan.
Nguyen Ba TungHung Loc Agricultural Research Center (HLARC), Dong Nai, Vietnam.
Nguyen Anh VuInternational Laboratory for Cassava Molecular Breeding (ILCMB), AGI, Hanoi, Vietnam.
Kaho YamaguchiKihara Institute for Biological Research, Yokohama City University, Kanagawa, Japan.
Hiroyuki TsujiKihara Institute for Biological Research, Yokohama City University, Kanagawa, Japan.
Yoshinori UtsumiCenter for Sustainable Resource Science, RIKEN, Kanagawa, Japan.
Motoaki SekiCenter for Sustainable Resource Science, RIKEN, Kanagawa, Japan. motoaki.seki@riken.jp.ORCID http://orcid.org/0000-0001-8288-0467
Agricultural Genetics Institute · VNRIKEN Center for Sustainable Resource Science · JPKihara Institute for Biological Research · JPUniversity of Battambang · KH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageThe field survey in this article showed in 'KU50', a popular variety and late-branching type of cassava in Southeast Asia, that flowering rarely occurs in normal-field conditions in Southeast Asia but is strongly induced in the dry season in the mountainous region. Flowering time is correlated with the expression patterns of MeFT1 and homologs of Arabidopsis GI, PHYA, and NF-Ys. Cassava (Manihot esculenta Crantz) is a tropical crop that is propagated vegetatively rather than sexually by seed. Flowering rarely occurs in the erect-type variety grown in Southeast Asia, but it is known that cassava produces flowers every year in mountainous regions. Data pertaining to the effect of environmental factors on flowering time and gene expression in cassava, however, is limited. The aim of the present study was to determine the kinds of environmental conditions that regulate flowering time in cassava and the underlying molecular mechanisms. The flowering status of KU50, a popular variety in Southeast Asia and late-branching type of cassava, was monitored in six fields in Vietnam and Cambodia. At non-flowering and flowering field locations in North Vietnam, the two FLOWERING LOCUS T (FT)-like genes, MeFT1 and MeFT2, were characterized by qPCR, and the pattern of expression of flowering-related genes and genes responsive to environmental signals were analyzed by using RNA sequencing data from time-series samples. Results indicate that cassava flowering was induced in the dry season in the mountain region, and that flowering time was correlated with the expression of MeFT1, and homologs of Arabidopsis GI, PHYA, and NF-Ys. Based upon these data, we hypothesize that floral induction in cassava is triggered by some conditions present in the mountain regions during the dry season.

Indexed as

ArabidopsisManihotAsia, SoutheasternGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsPlant ProteinsCassavaField transcriptomeFloweringManihot esculentaMeFT1

Identifiers

PMID32902791
OpenAlexW3083912311

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.