Evidence map›Paper›PMID 32901427›Full record

ArticleIn vitro cellular & developmental biology. Animal2020

Pharmacological and nutritional modulation of autophagy in a rainbow trout (Oncorhynchus mykiss) gill cell line, RTgill-W1.

Juan-Ting Liu, Jaramar Balmori-Cedeno, Ehab Misk, John S Lumsden

Abstract read
PubMed Publisher
In one paragraph

Article in In vitro cellular & developmental biology. Animal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Juan-Ting LiuDepartment of Pathobiology, University of Guelph, Guelph, ON, N1G 2W1, Canada.
Jaramar Balmori-CedenoDepartment of Pathobiology, University of Guelph, Guelph, ON, N1G 2W1, Canada.
Ehab MiskDepartment of Pathobiology, University of Guelph, Guelph, ON, N1G 2W1, Canada.
John S LumsdenDepartment of Pathobiology, University of Guelph, Guelph, ON, N1G 2W1, Canada. jsl@uoguelph.ca.ORCID http://orcid.org/0000-0002-3455-4197
University of Guelph · CAHuntsman Marine Science Centre · CAMowi (Canada) · CA

Funding

Education Ministry of the Taiwan Government 00Natural Sciences and Engineering Research Council of Canada RGPIN-2016-06202Ontario Ministry of Agriculture, Food and Rural Affairs 00Ontario Veterinary College, University of Guelph 00
6 · The paper itself

Abstract

Autophagy is involved in the modulation of nutrition, immunity, and disease in humans and animals. To understand the impact of autophagy modulation on a rainbow trout gill cell line, RTgill-W1, treatments including reduced nutrition (2% fetal bovine serum compared with 10% control), rapamycin, 3-methyladenine, deoxynivalenol, and chloroquine were tested. Western blot and immunofluorescence were used to detect microtubule-associated protein 1A/1B-light chain protein and quantitative polymerase chain reaction was used to detect the expression of 10 autophagy-related genes. At 3-d post-treatment, reduced nutrition significantly (p < 0.05) increased autophagy while deoxynivalenol significantly (p < 0.01) suppressed it compared to controls. These phenomena were confirmed by using immunofluorescence to detect the number of autophagosomes in RTgill-W1. Chloroquine is critical to allow observation of microtubule-associated protein 1A/1B-light chain protein in this model. The commonly used autophagy-modulating chemicals rapamycin and 3-methyladenine either activated or suppressed microtubule-associated protein 1A/1B-light chain protein, respectively, as expected from the literature, but did not act in a consistently significant manner. Expression of five of the 10 Atg genes, including lc3, gabarap, atg4, atg7, and atg12, were altered in a similar pattern to microtubule-associated protein 1A/1B-light chain protein. The consistent trend of autophagy-related gene upregulation including becn1, lc3, gabarap, and atg9 following treatment with 3-methyladenine and chloroquine is suggestive of a novel feedback regulation in the autophagy machinery.

Indexed as

AutophagyNutrientsAdenineAnimalsAutophagosomesCell LineCell SurvivalChloroquineFish ProteinsGene Expression RegulationGillsMicrotubule-Associated ProteinsOncorhynchus mykissPharmaceutical PreparationsSerumSirolimus3-methyladenineAdenineChloroquinedeoxynivalenolFish ProteinsMicrotubule-Associated ProteinsNutrientsPharmaceutical PreparationsSirolimusTrichothecenesAutophagyAutophagy-related genesChloroquineDeoxynivalenolReduced nutritionRTgill-W1

Identifiers

PMID32901427
OpenAlexW3083912737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.