Evidence map›Paper›PMID 32901386›Full record

ArticleMicrobial ecology2021

Novel Virus on Filamentous Arthronema africanum Cyanobacterium.

Karel Petrzik, Jaromír Lukavský, Igor Koloniuk

Abstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Karel PetrzikDepartment of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branišovská 31, České Budějovice, Czech Republic. petrzik@umbr.cas.cz.ORCID https://orcid.org/0000-0001-9668-1223
Jaromír LukavskýCentre for Phycology, Institute of Botany, Czech Academy of Sciences, Dukelská 135, Třeboň, Czech Republic.ORCID https://orcid.org/0000-0002-8939-4725
Igor KoloniukDepartment of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branišovská 31, České Budějovice, Czech Republic.
Czech Academy of Sciences · CZ

Funding

institutional support RVO60077344institutional support RVO67985939Technologická Agentura České Republiky Biocirtech T01000048
6 · The paper itself

Abstract

Widely distributed in water environments and in soil, cyanobacteria are hosts of lysogenic or lytic bacterioviruses. A novel, probably lysogenic virus (phage) for which the name Arthronema africanum virus TR020 (Aa-TR020) is proposed, has been isolated from filamentous freshwater cyanobacterium Arthronema africanum. The virus formed turbid plaques on plate culture of A. africanum strain 1980/01 but not on other Arthronema strain and other bacterial species. The genome of Aa-TR020 is linear molecule of dsDNA, 44,805 bp in length with 216 bp long terminal repeats and with G + C content of 46%. Fifty-five genes organized on plus and minus strands were predicted there. The genome size, gene arrangement, and selected protein sequences showed relatedness to Phormidium virus Pf-WMP3 and other viruses known to infect cyanobacteria and classified in the family Podoviridae.

Indexed as

Amino Acid SequenceBacteriophagesBase CompositionCyanobacteriaDNA, ViralFresh WaterGenome SizeGenome, ViralHost SpecificityLysogenyPhylogenyPodoviridaeSequence Analysis, DNAViral ProteinsDNA, ViralViral ProteinsComplete sequencePodophagePodovirus

Identifiers

PMID32901386
OpenAlexW3083936430

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.