Evidence map›Paper›PMID 32901160›Full record

ArticleNature structural & molecular biology2020

Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR.

Manman Lu, Ryan W Russell, Alexander J Bryer, Caitlin M Quinn, Guangjin Hou, Huilan Zhang, Charles D Schwieters, Juan R Perilla, Angela M Gronenborn, Tatyana Polenova

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Synthesis ofMagnetic resonance in chemistry : MRC · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Transient Occupancy and Pore Dynamics: IP6 Behavior in HIV-1The journal of physical chemistry. B · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Exploring the Structural Divergence of HIV and SRLV Lentiviral Capsids.Journal of the American Chemical Society · 2025
    Article
  12. Review
  13. Review
  14. IntegratingJournal of the American Chemical Society · 2024
    Article
  15. Solid-State NMRJournal of magnetic resonance (San Diego, Calif. : 1997) · 2024
    Article
  16. The capsid revolution.Journal of molecular cell biology · 2024
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Manman LuDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.ORCID http://orcid.org/0000-0002-4156-4975
Ryan W RussellDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.ORCID http://orcid.org/0000-0002-3599-133X
Alexander J BryerDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.
Caitlin M QuinnDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.ORCID http://orcid.org/0000-0001-6172-7324
Guangjin HouDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.ORCID http://orcid.org/0000-0001-8216-863X
Huilan ZhangDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA.
Charles D SchwietersImaging Sciences Laboratory, Center for Information Technology, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-4216-4658
Juan R PerillaDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA. jperilla@udel.edu.ORCID http://orcid.org/0000-0003-1171-6816
Angela M GronenbornPittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA. amg100@pitt.edu.ORCID http://orcid.org/0000-0001-9072-3525
Tatyana PolenovaDepartment of Chemistry and Biochemistry, University of Delaware, Newark, DE, USA. tpolenov@udel.edu.ORCID http://orcid.org/0000-0002-0346-1131
University of Pittsburgh · USUniversity of Delaware · USDalian Institute of Chemical Physics · CNNational Institutes of Health · US

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ENGELMAN, ALAN N. · 2007 to 2018
$48.1M
Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2019 to 2021
$14.1M
Pilot Research Subproject ProgramP30GM110758 · NIGMS · UNIVERSITY OF DELAWARE · PI PATEL, SANDEEP · 2014 to 2018
$5.8M
750MHz Wide Bore NMR SpectrometerS10OD012213 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2013 to 2013
$2.0M
A low volume isothermal titration calorimeter for structure-function studies of biological macromoleculesS10OD023481 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2017 to 2017
$127k
NIAID NIH HHS P50 AI150481NIGMS NIH HHS P30 GM110758NIGMS NIH HHS P50 GM082251NIH HHS S10 OD012213NIH HHS S10 OD023481
6 · The paper itself

Abstract

HIV-1 capsid plays multiple key roles in viral replication, and inhibition of capsid assembly is an attractive target for therapeutic intervention. Here, we report the atomic-resolution structure of capsid protein (CA) tubes, determined by magic-angle spinning NMR and data-guided molecular dynamics simulations. Functionally important regions, including the NTD β-hairpin, the cyclophilin A-binding loop, residues in the hexamer central pore, and the NTD-CTD linker region, are well defined. The structure of individual CA chains, their arrangement in the pseudo-hexameric units of the tube and the inter-hexamer interfaces are consistent with those in intact capsids and substantially different from the organization in crystal structures, which feature flat hexamers. The inherent curvature in the CA tubes is controlled by conformational variability of residues in the linker region and of dimer and trimer interfaces. The present structure reveals atomic-level detail in capsid architecture and provides important guidance for the design of novel capsid inhibitors.

Indexed as

CapsidCapsid ProteinsHIV-1HIV InfectionsHumansModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein MultimerizationCapsid Proteins

Identifiers

PMID32901160
PMCPMC7490828
OpenAlexW3082349401

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.