Evidence map›Paper›PMID 32900948›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Concanamycin A counteracts HIV-1 Nef to enhance immune clearance of infected primary cells by cytotoxic T lymphocytes.

Mark M Painter, Gretchen E Zimmerman, Madeline S Merlino, Andrew W Robertson, Valeri H Terry, Xuefeng Ren, Megan R McLeod, Lyanne Gomez-Rodriguez, Kirsten A Garcia, Jolie A Leonard and 12 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. HIV-1 subtypes maintain distinctive physicochemical signatures in Nef domains associated with immunoregulation.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 3 institutions in 1 country.

Mark M PainterGraduate Program in Immunology, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0002-0180-2748
Gretchen E ZimmermanDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.
Madeline S MerlinoDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.
Andrew W RobertsonLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Valeri H TerryDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0002-2499-3882
Xuefeng RenDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Megan R McLeodDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.
Lyanne Gomez-RodriguezLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Kirsten A GarciaDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.
Jolie A LeonardDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.
Kay E LeopoldDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.
Andrew J NeevelDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 48109.
Jay LubowDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0002-7125-453X
Eli OlsonGraduate Program in Immunology, University of Michigan, Ann Arbor, MI 48109.
Alicja Piechocka-TrochaRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139.
David R CollinsRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139.
Ashootosh TripathiLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Malini RaghavanDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0002-1345-9318
Bruce D WalkerRagon Institute of MGH, MIT and Harvard, Cambridge, MA 02139.ORCID 0000-0001-6122-9245
James H HurleyDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0001-5054-5445
David H ShermanLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0001-8334-3647
Kathleen L CollinsGraduate Program in Immunology, University of Michigan, Ann Arbor, MI 48109; klcollin@umich.edu.
University of Michigan · USHoward Hughes Medical Institute · USQB3 · US

Funding

X-ray Screening and Rapid Structure DeterminationP50AI150476 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSON, ALEXANDER · 2019 to 2021
$14.4M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
RESEARCH TRAINING IN EXPERIMENTAL IMMUNOPATHOLOGYT32AI007413 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Bethany B. Moore · 1993 to 2026
$9.8M
Cellular Biotechnology Training Program (CBTP)T32GM008353 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHWENDEMAN, ANNA · 1991 to 2021
$9.3M
INTERACTIONS &MECHANISMS OF FUNCTION OF THE TAP COMPLEXR01AI044115 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MALINI RAGHAVAN · 1999 to 2026
$9.3M
Allostery and Hijacking of Host Membrane Traffic by HIV-1 Accessory ProteinsR01AI120691 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H · 2015 to 2024
$6.1M
Development of natural product inhibitors of Nef for clearance of HIV reservoirsR01AI148383 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L., SHERMAN, DAVID H · 2019 to 2023
$3.8M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Development of Nef antagonists to enhance CTL clearance of HIV reservoirsR33AI116158 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 2016 to 2018
$1.5M
Development of Nef antagonists to enhance CTL clearance of HIV reservoirsR21AI116158 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 2014 to 2015
$424k
Development of Nef InhibitorsR21AI067011 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 2009 to 2010
$416k
Mechanisms of HIV-1 persistence and strategies to elicit Cytotoxic T Lymphocyte-mediated clearance of infected cellsF31AI131957 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PAINTER, MARK M · 2017 to 2019
$107k
NIAID NIH HHS F31 AI131957NIAID NIH HHS P50 AI150476NIAID NIH HHS R01 AI044115NIAID NIH HHS R01 AI120691NIAID NIH HHS R01 AI148383NIAID NIH HHS R21 AI067011NIAID NIH HHS R21 AI116158NIAID NIH HHS R33 AI116158NIAID NIH HHS T32 AI007413NIGMS NIH HHS T32 GM007315NIGMS NIH HHS T32 GM008353NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

Nef is an HIV-encoded accessory protein that enhances pathogenicity by down-regulating major histocompatibility class I (MHC-I) expression to evade killing by cytotoxic T lymphocytes (CTLs). A potent Nef inhibitor that restores MHC-I is needed to promote immune-mediated clearance of HIV-infected cells. We discovered that the plecomacrolide family of natural products restored MHC-I to the surface of Nef-expressing primary cells with variable potency. Concanamycin A (CMA) counteracted Nef at subnanomolar concentrations that did not interfere with lysosomal acidification or degradation and were nontoxic in primary cell cultures. CMA specifically reversed Nef-mediated down-regulation of MHC-I, but not CD4, and cells treated with CMA showed reduced formation of the Nef:MHC-I:AP-1 complex required for MHC-I down-regulation. CMA restored expression of diverse allotypes of MHC-I in Nef-expressing cells and inhibited Nef alleles from divergent clades of HIV and simian immunodeficiency virus, including from primary patient isolates. Lastly, we found that restoration of MHC-I in HIV-infected cells was accompanied by enhanced CTL-mediated clearance of infected cells comparable to genetic deletion of Nef. Thus, we propose CMA as a lead compound for therapeutic inhibition of Nef to enhance immune-mediated clearance of HIV-infected cells.

Indexed as

HIV-1Host-Pathogen InteractionsMacrolidesT-Lymphocytes, CytotoxicCells, CulturedHistocompatibility Antigens Class IHIV InfectionsHumansnef Gene Products, Human Immunodeficiency Virusconcanamycin AHistocompatibility Antigens Class IMacrolidesnef Gene Products, Human Immunodeficiency Virusconcanamycin Acytotoxic T lymphocytesHIVMHC-INef

Identifiers

PMID32900948
PMCPMC7519347
OpenAlexW3084382690

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.