Evidence map›Paper›PMID 32900387›Full record

ArticleHereditas2020

Comparative transcriptomic analysis of the tea plant (Camellia sinensis) reveals key genes involved in pistil deletion.

Yufei Liu, Dandan Pang, Yiping Tian, Youyong Li, Huibing Jiang, Yunnan Sun, Lifei Xia, Linbo Chen

Open access · goldAbstract read
In one paragraph

Article in Hereditas, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yufei LiuTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China.ORCID http://orcid.org/0000-0001-8839-8997
Dandan PangTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China.
Yiping TianTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China.
Youyong LiTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China.
Huibing JiangTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China.
Yunnan SunTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China.
Lifei XiaTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China. 852543078@qq.com.
Linbo ChenTea Research Institute, Yunnan Academy of Agricultural Sciences, Menghai, 666201, China. chenlinbo2002@sina.com.
Yunnan Academy of Agricultural Sciences · CN

Funding

China Earmarked Fund for Modern Agro-industry Technology Research System CARS-19Key R&D Program of China 2019YFD1001601State Key Laboratory of Tea Plant Biology and Utilization SKLTOF20150105
6 · The paper itself

Abstract

backgroundThe growth process of the tea plant (Camellia sinensis) includes vegetative growth and reproductive growth. The reproductive growth period is relatively long (approximately 1.5 years), during which a large number of nutrients are consumed, resulting in reduced tea yield and quality, accelerated aging, and shortened economic life of the tea plant. The formation of unisexual and sterile flowers can weaken the reproductive growth process of the tea plant. To further clarify the molecular mechanisms of pistil deletion in the tea plant, we investigated the transcriptome profiles in the pistil-deficient tea plant (CRQS), wild tea plant (WT), and cultivated tea plant (CT) by using RNA-Seq.

resultsA total of 3683 differentially expressed genes were observed between CRQS and WT flower buds, with 2064 upregulated and 1619 downregulated in the CRQS flower buds. These genes were mainly involved in the regulation of molecular function and biological processes. Ethylene synthesis-related ACC synthase genes were significantly upregulated and ACC oxidase genes were significantly downregulated. Further analysis revealed that one of the WIP transcription factors involved in ethylene synthesis was significantly upregulated. Moreover, AP1 and STK, genes related to flower development, were significantly upregulated and downregulated, respectively.

conclusionsThe transcriptome analysis indicated that the formation of flower buds with pistil deletion is a complex biological process. Our study identified ethylene synthesis, transcription factor WIP, and A and D-class genes, which warrant further investigation to understand the cause of pistil deletion in flower bud formation.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantPhenotypeTranscriptomeCamellia sinensisComputational BiologyFlowersGene OntologyABCDE modelCamellia sinensisEthylenePistil deletionSpecial germplasm

Identifiers

PMID32900387
PMCPMC7487804
OpenAlexW3086882119

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.