Evidence map›Paper›PMID 32898219›Full record

ArticleJournal of experimental botany2020

Soybean TILLING-by-Sequencing+ reveals the role of novel GmSACPD members in unsaturated fatty acid biosynthesis while maintaining healthy nodules.

Naoufal Lakhssassi, Zhou Zhou, Shiming Liu, Sarbottam Piya, Mallory A Cullen, Abdelhalim El Baze, Dounya Knizia, Gunvant B Patil, Oussama Badad, Mohamed G Embaby and 5 more

Abstract read
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In one paragraph

Article in Journal of experimental botany, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
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  4. Article
  5. Review
  6. Review
  7. A novel type of Brassica napus with higher stearic acid in seeds developed through genome editing of BnaSAD2 family.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  8. Article
  9. Bioengineering of Soybean Oil and Its Impact on Agronomic Traits.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. TILLING-by-SequencingInternational journal of molecular sciences · 2021
    Article
  17. Improving soybean seed oil without poor agronomics.Journal of experimental botany · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Naoufal LakhssassiDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.
Zhou ZhouDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.
Shiming LiuDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.
Sarbottam PiyaDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Mallory A CullenDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.
Abdelhalim El BazeDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.
Dounya KniziaDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.
Gunvant B PatilInstitute for Genomics of Crop Abiotic Stress Tolerance, Department of Plant and Soil Science, Texas Tech University, Lubbock, TX, USA.
Oussama BadadDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.
Mohamed G EmbabyDepartment of Animal Science, Food, and Nutrition, Southern Illinois University, Carbondale, IL, USA.
Jonas MeksemTrinity College of Arts and Sciences, Duke University, Durham, NC, USA.
Aicha LakhssassiFaculty of Sciences and Technologies, University of Lorraine, Nancy, France.
Amer AbuGhazalehDepartment of Animal Science, Food, and Nutrition, Southern Illinois University, Carbondale, IL, USA.
Tarek HeweziDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, USA.
Khalid MeksemDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Developing soybean lines with high levels of stearic acid is a primary goal of the soybean industry. Most high-stearic-acid soybeans carry different GmSACPD-C mutated alleles. However, due to the dual role of GmSACPD-C in seeds and nodule development, all derived deleterious GmSACPD-C mutant alleles are of extremely poor agronomic value because of defective nodulation. The soybean stearoyl-acyl carrier protein desaturase (GmSACPD) gene family is composed of five members. Comparative genomics analysis indicated that SACPD genes were duplicated and derived from a common ancestor that is still present in chlorophytic algae. Synteny analysis showed the presence of segment duplications between GmSACPD-A/GmSACPD-B, and GmSACPD-C/GmSACPD-D. GmSACPD-E was not contained in any duplicated segment and may be the result of tandem duplication. We developed a TILLING by Target Capture Sequencing (Tilling-by-Sequencing+) technology, a versatile extension of the conventional TILLING by sequencing, and successfully identified 12, 14, and 18 ethyl methanesulfonate mutants at the GmSACPD-A, GmSACPD-B, and GmSACPD-D genes, respectively. Functional analysis of all identified mutants revealed an unprecedented role of GmSACPD-A, GmSACPD-B, and GmSACPD-D in unsaturated fatty acid biosynthesis without affecting nodule development and structure. This discovery will positively impact the development of high-stearic-acid lines to enhance soybean nutritional value without potential developmental tradeoffs.

Indexed as

Glycine maxSeedsAllelesFatty Acids, UnsaturatedPlant ProteinsFatty Acids, UnsaturatedPlant ProteinsBenchmarkingGmSACPD gene familynodulationstearic acidsubcellular localizationsubfunctionalizationTILLING-by-Sequencing+

Identifiers

PMID32898219

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.