Evidence map›Paper›PMID 32896939›Full record

ArticleEquine veterinary journal2021

Commercial genetic testing for type 2 polysaccharide storage myopathy and myofibrillar myopathy does not correspond to a histopathological diagnosis.

Stephanie J Valberg, Carrie J Finno, Marisa L Henry, Melissa Schott, Deborah Velez-Irizarry, Sichong Peng, Erica C McKenzie, Jessica L Petersen

Open access · hybridAbstract read
In one paragraph

Article in Equine veterinary journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.0field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Stephanie J ValbergLarge Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0001-5978-7010
Carrie J FinnoDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA.ORCID https://orcid.org/0000-0001-5924-0234
Marisa L HenryLarge Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA.
Melissa SchottLarge Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA.
Deborah Velez-IrizarryLarge Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA.
Sichong PengDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA.
Erica C McKenzieDepartment of Clinical Sciences, College of Veterinary Medicine, Oregon State University, Corvallis, OR, USA.ORCID https://orcid.org/0000-0001-8041-5238
Jessica L PetersenDepartment of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID https://orcid.org/0000-0001-5438-8555
Michigan State University · USUniversity of California, Davis · USOregon State University · USUniversity of Nebraska–Lincoln · US

Funding

Foundation for the National Institutes of Health L40TR001136Mary Anne McPhail Endowment at Michigan State UniversityNCATS NIH HHS L40 TR001136
6 · The paper itself

Abstract

backgroundCommercial genetic tests for type 2 polysaccharide storage myopathy (PSSM2) and myofibrillar myopathy (MFM) have not been validated by peer-review, and formal regulation of veterinary genetic testing is lacking.

objectivesTo compare genotype and allele frequencies of commercial test variants (P variants) in MYOT (P2; rs1138656462), FLNC (P3a; rs1139799323), FLNC (P3b; rs1142918816) and MYOZ3 (P4; rs1142544043) between Warmblood (WB) and Arabian (AR) horses diagnosed with PSSM2/MFM by muscle histopathology, and phenotyped breed-matched controls. To quantify variant frequency in public repositories of ancient and modern horse breeds. STUDY

designCross sectional using archived clinical material and publicly available data.

methodsWe studied 54 control-WB, 68 PSSM2/MFM-WB, 30 control-AR, 30 PSSM2/MFM-AR and 205 public genotypes. Variants were genotyped by pyrosequencing archived DNA. Genotype and allele frequency, and number of variant alleles or loci were compared within breed between controls, PSSM2/MFM combined and MFM or PSSM2 horses considered separately using additive/genotypic and dominant models (Fisher's exact tests). Variant frequencies in modern, early domestic and Przewalski horses were determined from a public data repository.

resultsThere was no significant association between any P locus and a histopathological diagnosis of PSSM2/MFM, and no difference between control and myopathic horses in total loci with alternative alleles, or total alternate alleles when PSSM2/MFM was considered combined or separately as PSSM2 or MFM. For all tests, sensitivity was <0.33. Allele frequencies in WB (controls/cases) were: 8%/15% (P2), 5%/6% (P3a/b) and 9%/13% (P4); in AR, frequencies were: 12%/17% (P2), 2%/2% (P3a/b) and 7%/12% (P4). All P variants were present in early domestic (400- to 5500-year-old) horses and P2 present in the Przewalski.

conclusionsBecause of the lack of significant association between a histopathological diagnosis of PSSM2 or MFM and the commercial genetic test variants P2, P3 and P4 in WB and AR, we cannot recommend the use of these variant genotypes for selection and breeding, prepurchase examination or diagnosis of a myopathy.

Indexed as

Horse DiseasesAnimalsCross-Sectional StudiesGenetic TestingHorsesMuscle, SkeletalMyopathies, Structural, CongenitalPolysaccharidesPolysaccharidesglycogenhorsemuscle diseaseskeletal musclevalidation

Identifiers

PMID32896939
PMCPMC7937766
OpenAlexW3084194950

What OpenQuestion holds

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LicenceCC BY-NC
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.