Evidence map›Paper›PMID 32895765›Full record

ArticleFunctional & integrative genomics2020

Comparative transcriptomic analysis reveals the mechanistic basis of Pib-mediated broad spectrum resistance against Magnaporthe oryzae.

Jiehua Qiu, Feifei Lu, Meng Xiong, Shuai Meng, Xianglin Shen, Yanjun Kou

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Functional & integrative genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Whole Genome Sequencing of the Moruga Hill Rice (Biotech (Basel (Switzerland)) · 2026
    Article
  2. Review
  3. Frontiers in immunology · 2024
    Article
  4. Article
  5. Pathogens (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jiehua Qiu *State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 311400, China.
Feifei Lu *State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 311400, China.
Meng XiongKey Laboratory of Three Gorges Regional Plant Genetics & Germplasm Enhancement (CTGU)/Biotechnology Research Center, China Three Gorges University, Yichang, 443000, China.
Shuai MengState Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 311400, China.
Xianglin ShenKey Laboratory of Three Gorges Regional Plant Genetics & Germplasm Enhancement (CTGU)/Biotechnology Research Center, China Three Gorges University, Yichang, 443000, China.
Yanjun KouState Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 311400, China. kouyanjun@caas.cn.
China National Rice Research Institute · CNChina Three Gorges University · CN

Funding

key R&D project of Zhejiang Province 2019C02018Natural Science Foundation of Zhejiang Province LQ19C130007Natural Science Foundation of Zhejiang Province LQ19C140004
6 · The paper itself

Abstract

Rice blast, caused by the fungus Magnaporthe oryzae, is a highly damaging disease. Introducing genes, which confer a broad spectrum resistance to the disease, such as Pib, makes an important contribution to protecting rice production. However, little is known regarding the mechanistic basis of the products of such genes. In this study, transcriptome of the cultivar Lijiangxintuanheigu (LTH) and its monogenic IRBLb-B which harbors Pib treated with M. oryzae were compared. Among the many genes responding transcriptionally to infection were some encoding products involved in the metabolism of ROS (reactive oxygen species), in jasmonate (JA) metabolism, and WRKY transcription factors, receptor kinases, and resistance response signal modulation. The down-regulation of genes encoding peroxiredoxin and glutathione S transferases implied that the redox homeostasis is essential for the expression of Pib-mediated resistance. The up-regulation of seven disease resistance-related genes, including three encoding a NBS-LRR protein, indicated that disease resistance-related genes are likely tend to support the expression of Pib resistance. These data revealed that potential candidate genes and transcriptional reprogramming were involved in Pib-mediated resistance mechanisms.

Indexed as

AscomycotaComputational BiologyCyclopentanesDisease ResistanceGene Expression Regulation, PlantOryzaOxylipinsPlant DiseasesPlant ProteinsPlants, Genetically ModifiedTranscription FactorsTranscriptomeCyclopentanesjasmonic acidOxylipinsPlant ProteinsTranscription FactorsBroad-spectrum resistanceMagnaporthe oryzaePibRedoxResistant near isogenic lineRNA-seq

Identifiers

PMID32895765
PMCPMC7585573
OpenAlexW3083682593

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.