Evidence map›Paper›PMID 32895437›Full record

ArticleCommunications biology2020

Wireworm (Coleoptera: Elateridae) genomic analysis reveals putative cryptic species, population structure, and adaptation to pest control.

Kimberly R Andrews, Alida Gerritsen, Arash Rashed, David W Crowder, Silvia I Rondon, Willem G van Herk, Robert Vernon, Kevin W Wanner, Cathy M Wilson, Daniel D New and 3 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 2 countries.

Kimberly R AndrewsInstitute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA. kimberlya@uidaho.edu.ORCID http://orcid.org/0000-0003-4721-1924
Alida GerritsenComputational Sciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Arash RashedDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.ORCID http://orcid.org/0000-0001-6640-2457
David W CrowderDepartment of Entomology, Washington State University, Pullman, WA, 99164, USA.
Silvia I RondonOregon State University, Hermiston Agricultural Research and Extension Center, Hermiston, OR, 97838, USA.ORCID http://orcid.org/0000-0002-7819-6934
Willem G van HerkAgassiz Research and Development Centre, Agriculture and Agri-Food Canada, Agassiz, British Columbia, Canada, V0M 1A0.
Robert VernonSentinel IPM Services, Chilliwack, British Columbia, Canada, V2R 3B5.
Kevin W WannerDepartment of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT, 59717, USA.
Cathy M WilsonIdaho Wheat Commission, Boise, ID, 83702, USA.
Daniel D NewInstitute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA.
Matthew W FagnanInstitute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA.
Paul A HohenloheInstitute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA.
Samuel S HunterInstitute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA.ORCID http://orcid.org/0000-0002-9358-1777
University of Idaho · USAgriculture and Agri-Food Canada · CAIdaho State Board of Education · USMontana State University · USNational Laboratory of the Rockies · USNative Mental Health Association of Canada · CAOregon State University · USWashington State University · US

Funding

Genomics Resources Core (GRC)P30GM103324 · NIGMS · UNIVERSITY OF IDAHO · PI FORNEY, LARRY J · 2013 to 2017
$5.0M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIGMS NIH HHS P30 GM103324NIH HHS S10 OD018174
6 · The paper itself

Abstract

The larvae of click beetles (Coleoptera: Elateridae), known as "wireworms," are agricultural pests that pose a substantial economic threat worldwide. We produced one of the first wireworm genome assemblies (Limonius californicus), and investigated population structure and phylogenetic relationships of three species (L. californicus, L. infuscatus, L. canus) across the northwest US and southwest Canada using genome-wide markers (RADseq) and genome skimming. We found two species (L. californicus and L. infuscatus) are comprised of multiple genetically distinct groups that diverged in the Pleistocene but have no known distinguishing morphological characters, and therefore could be considered cryptic species complexes. We also found within-species population structure across relatively short geographic distances. Genome scans for selection provided preliminary evidence for signatures of adaptation associated with different pesticide treatments in an agricultural field trial for L. canus. We demonstrate that genomic tools can be a strong asset in developing effective wireworm control strategies.

Indexed as

Genome, InsectPest ControlAdaptation, PhysiologicalAnimalsColeopteraDatabases, GeneticGenetics, PopulationGenetic VariationGeographyPhylogenyPrincipal Component AnalysisSample SizeSelection, GeneticSpecies Specificity

Identifiers

PMID32895437
PMCPMC7477237
OpenAlexW3083401255

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.