Evidence map›Paper›PMID 32893457›Full record

ArticleMicrobial biotechnology2020

Screening of a genome-reduced Corynebacterium glutamicum strain library for improved heterologous cutinase secretion.

Johannes Hemmerich, Mohamed Labib, Carmen Steffens, Sebastian J Reich, Marc Weiske, Meike Baumgart, Christian Rückert, Matthias Ruwe, Daniel Siebert, Volker F Wendisch and 3 more

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Biomanufacturing Potential of Streamlined Cells.Biotechnology and bioengineering · 2025
    Article
  3. Article
  4. Metabolic Profile of the Genome-ReducedACS synthetic biology · 2024
    Article
  5. Article
  6. Promising non-model microbial cell factories obtained by genome reduction.Frontiers in bioengineering and biotechnology · 2024
    Review
  7. Article
  8. Article
  9. Exploring the Potential ofFrontiers in bioengineering and biotechnology · 2021
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Johannes HemmerichInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.ORCID 0000-0002-9786-6315
Mohamed LabibInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.ORCID 0000-0003-2616-9608
Carmen SteffensInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.
Sebastian J ReichInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.
Marc WeiskeInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.
Meike BaumgartInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.ORCID 0000-0002-9874-1151
Christian RückertMicrobial Genomics and Biotechnology, Center for Biotechnology, Bielefeld University, Bielefeld, 33615, Germany.ORCID 0000-0002-9722-4435
Matthias RuweMicrobial Genomics and Biotechnology, Center for Biotechnology, Bielefeld University, Bielefeld, 33615, Germany.ORCID 0000-0002-9695-1358
Daniel SiebertFaculty of Biology, Chair of Genetics of Prokaryotes, Bielefeld University, Bielefeld, 33615, Germany.
Volker F WendischFaculty of Biology, Chair of Genetics of Prokaryotes, Bielefeld University, Bielefeld, 33615, Germany.ORCID 0000-0003-3473-0012
Jörn KalinowskiMicrobial Genomics and Biotechnology, Center for Biotechnology, Bielefeld University, Bielefeld, 33615, Germany.ORCID 0000-0002-9052-1998
Wolfgang WiechertInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.ORCID 0000-0001-8501-0694
Marco OldigesInstitute of Bio- and Geosciences - Biotechnology (IBG-1), Forschungszentrum Jülich, Institute of Bio- and Geosciences - Biotechnology (IBG-1), Jülich, 52425, Germany.ORCID 0000-0003-0704-5597
Forschungszentrum Jülich · DEBielefeld University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The construction of microbial platform organisms by means of genome reduction is an ongoing topic in biotechnology. In this study, we investigated whether the deletion of single or multiple gene clusters has a positive effect on the secretion of cutinase from Fusarium solani pisi in the industrial workhorse Corynebacterium glutamicum. A total of 22 genome-reduced strain variants were compared applying two Sec signal peptides from Bacillus subtilis. High-throughput phenotyping using robotics-integrated microbioreactor technology with automated harvesting revealed distinct cutinase secretion performance for a specific combination of signal peptide and genomic deletions. The biomass-specific cutinase yield for strain GRS41_51_NprE was increased by ~ 200%, although the growth rate was reduced by ~ 60%. Importantly, the causative deletions of genomic clusters cg2801-cg2828 and rrnC-cg3298 could not have been inferred a priori. Strikingly, bioreactor fed-batch cultivations at controlled growth rates resulted in a complete reversal of the screening results, with the cutinase yield for strain GRS41_51_NprE dropping by ~ 25% compared to the reference strain. Thus, the choice of bioprocess conditions may turn a 'high-performance' strain from batch screening into a 'low-performance' strain in fed-batch cultivation. In conclusion, future studies are needed in order to understand metabolic adaptations of C. glutamicum to both genomic deletions and different bioprocess conditions.

Indexed as

Corynebacterium glutamicumBacillus subtilisCarboxylic Ester HydrolasesFusariumCarboxylic Ester Hydrolasescutinase

Identifiers

PMID32893457
PMCPMC7533341
OpenAlexW3083109797

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.