Evidence map›Paper›PMID 32893442›Full record

ArticleEMBO reports2020

Cell cycle dynamics of lamina-associated DNA.

Tom van Schaik, Mabel Vos, Daan Peric-Hupkes, Patrick Hn Celie, Bas van Steensel

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 136 citations in OpenAlex.

  1. Article
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  4. Genome-wide chromatin recording resolves dynamic cell state changes.bioRxiv : the preprint server for biology · 2026
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Tom van SchaikDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0001-7850-5074
Mabel VosDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Daan Peric-HupkesDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Patrick Hn CelieProtein Facility, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Bas van SteenselDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-0284-0404
The Netherlands Cancer Institute · NLErasmus MC · NL

Funding

Mapping Technology DevelopmentU54DK107965 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GILBERT, DAVID M · 2015 to 2019
$8.6M
NIDDK NIH HHS U54 DK107965
6 · The paper itself

Abstract

In mammalian interphase nuclei, more than one thousand large genomic regions are positioned at the nuclear lamina (NL). These lamina-associated domains (LADs) are involved in gene regulation and may provide a backbone for the folding of interphase chromosomes. Little is known about the dynamics of LADs during interphase, in particular at the onset of G1 phase and during DNA replication. We developed an antibody-based variant of the DamID technology (named pA-DamID) that allows us to map and visualize genome-NL interactions with high temporal resolution. Application of pA-DamID combined with synchronization and cell sorting experiments reveals that LAD-NL contacts are generally rapidly established early in G1 phase. However, LADs on the distal ~25 Mb of most chromosomes tend to contact the NL first and then gradually detach, while centromere-proximal LADs accumulate gradually at the NL. Furthermore, our data indicate that S-phase chromatin shows transiently increased lamin interactions. These findings highlight a dynamic choreography of LAD-NL contacts during interphase progression and illustrate the usefulness of pA-DamID to study the dynamics of genome compartmentalization.

Indexed as

ChromatinNuclear LaminaAnimalsCell NucleusChromosomesDNAInterphaseChromatinDNAcell cycleDamIDgenome organizationnuclear laminatelomeres

Identifiers

PMID32893442
PMCPMC7645246
OpenAlexW3083407263

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.