Evidence map›Paper›PMID 32892537›Full record

ArticleTurkish journal of medical sciences2021

Identification of novel TUBB1 variants in patients with macrothrombocytopenia.

Zihni Onur Çalışkaner, Abdullah Abdul Waheed, Merve Tuzlakoğlu Öztürk, Yeşim Oymak, Uygar Halis Tazebay, Nejat Akar, Ayten Kandilci, Didem Torun Özkan

Open access · bronzeAbstract read
In one paragraph

Article in Turkish journal of medical sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Zihni Onur ÇalışkanerDepartment of Molecular Biology and Genetics, Faculty of Science, Gebze Technical University, Kocaeli, TurkeyORCID 0000-0003-1385-1739
Abdullah Abdul WaheedDepartment of Molecular Biology and Genetics, Faculty of Science, Gebze Technical University, Kocaeli, TurkeyORCID 0000-0002-5895-5892
Merve Tuzlakoğlu ÖztürkDepartment of Molecular Biology and Genetics, Faculty of Science, Gebze Technical University, Kocaeli, TurkeyORCID 0000-0001-5983-2854
Yeşim OymakDepartment of Pediatric Hematology, Dr. Behçet Uz Children’s Hospital, İzmir, TurkeyORCID 0000-0002-6908-8309
Uygar Halis TazebayDepartment of Molecular Biology and Genetics, Faculty of Science, Gebze Technical University, Kocaeli, TurkeyORCID 0000-0003-1999-8213
Nejat AkarDepartment of Pediatrics, Faculty of Medicine, TOBB-ETU University, Ankara, TurkeyORCID 0000-0001-8228-8885
Ayten KandilciDepartment of Molecular Biology and Genetics, Faculty of Science, Gebze Technical University, Kocaeli, TurkeyORCID 0000-0003-4209-4992
Didem Torun ÖzkanMedical Laboratory, Vocational School of Health Services, İstanbul Okan University, İstanbul, TurkeyORCID 0000-0003-4210-5073
Gebze Technical University · TRDr. Behçet Uz Çocuk Hastalıkları Hastanesi · TROkan University · TRTOBB University of Economics and Technology · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background/aim: Macrothrombocytopenia is an autosomal-dominant disorder characterized by increased platelet size and a decreased number of circulating platelets. The membrane skeleton and the link between actin filaments of the skeleton and microtubules, which consist of alpha and beta tubulin [including the tubulin beta-1 chain (TUBB1)] heterodimers, are important for normal platelet morphology, and defects in these systems are associated with macrothrombocytopenia. Materials and methods: In this study, we sequenced the exons of the TUBB1 gene using DNA isolated from the peripheral blood samples of healthy controls (n = 47) and patients with macrothrombocytopenia (n = 37) from Turkey. The TUBB1 expression levels in fractioned blood samples from patients and healthy controls were analyzed by RT-qPCR and Western blot. Microtubule organization of the platelets in the peripheral blood smears of patients, and in mutant TUBB1-transfected HeLa cells, were analyzed by immunofluorescence staining. Results: A new TUBB1 c.803G>T (p.T178T) variant was detected in all of the control and patient samples. Importantly, we found 3 new heterozygous TUBB1 variants predicting amino acid substitutions: G146R (in 1 patient), E123Q (in 1 patient), and T274M (in 4 patients); the latter variant was associated with milder thrombocytopenia in cancer patients treated with paclitaxel. Ectopic expression of TUBB1 T274M/R307H variant in HeLa cells resulted in irregular microtubule organization. Conclusion: Further clinical and functional studies of the newly identified TUBB1 variants may offer important insights into their pathogenicity in macrothrombocytopenia.

Indexed as

Blood PlateletsHeterozygotePolymorphism, Single NucleotideAdolescentAdultAsian PeopleChildChild, PreschoolGenetic Predisposition to DiseaseHeLa CellsHumansMaleMicrotubulesThrombocytopeniaTubulinTurkeyTUBB1 protein, humanTubulinmacrothrombocytopeniaMYH9plateletsTUBB1

Identifiers

PMID32892537
PMCPMC8203157
OpenAlexW3084209542

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.