Evidence map›Paper›PMID 32888386›Full record

ArticleTransboundary and emerging diseases2021

Phylogenetic relationships investigation of Mycobacterium caprae strains from sympatric wild boar and goats based on whole genome sequencing.

Giovanna Ciaravino, Enric Vidal, Martí Cortey, Maite Martín, Albert Sanz, Irene Mercader, Claudia Perea, Suelee Robbe-Austerman, Alberto Allepuz, Bernat Pérez de Val

Open access · hybridAbstract read
In one paragraph

Article in Transboundary and emerging diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Nationwide seroprevalence ofFrontiers in microbiology · 2026
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  7. A One Health approach revealed the long-term role ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Giovanna CiaravinoDepartament de Sanitat i Anatomia Animals, Universitat Autònoma de Barcelona, Bellaterra, Spain.ORCID https://orcid.org/0000-0002-5796-8093
Enric VidalIRTA, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Bellaterra, Spain.ORCID https://orcid.org/0000-0002-4965-3286
Martí CorteyDepartament de Sanitat i Anatomia Animals, Universitat Autònoma de Barcelona, Bellaterra, Spain.ORCID https://orcid.org/0000-0003-1126-3423
Maite MartínIRTA, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Bellaterra, Spain.ORCID https://orcid.org/0000-0002-3588-2838
Albert SanzDepartament d'Agricultura, Ramaderia, Pesca i Alimentació de la Generalitat de Catalunya, Barcelona, Spain.
Irene MercaderDepartament d'Agricultura, Ramaderia, Pesca i Alimentació de la Generalitat de Catalunya, Barcelona, Spain.ORCID https://orcid.org/0000-0002-5857-8775
Claudia PereaNational Veterinary Services Laboratories, United States Department of Agriculture, Ames, IA, USA.ORCID https://orcid.org/0000-0002-4863-6863
Suelee Robbe-AustermanNational Veterinary Services Laboratories, United States Department of Agriculture, Ames, IA, USA.ORCID https://orcid.org/0000-0002-3794-3040
Alberto AllepuzDepartament de Sanitat i Anatomia Animals, Universitat Autònoma de Barcelona, Bellaterra, Spain.ORCID https://orcid.org/0000-0003-3518-1991
Bernat Pérez de ValIRTA, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Bellaterra, Spain.ORCID https://orcid.org/0000-0003-3127-9182
Centre de Recerca en Sanitat Animal · ESUniversitat Autònoma de Barcelona · ESGeneralitat de Catalunya · ESUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis (TB) in wildlife challenges epidemiological surveillance and disease control. An outbreak of TB was detected in a free-ranging wild boar population of a Natural Park in Catalonia (Spain) and the outbreak investigation was conducted in the area. During the study period (2015-2020), 278 wild boars were analysed by gross pathology, histopathology, mycobacterial culture and DVR-spoligotyping. In addition, all cattle (49) and goat (47) herds of the area were tested with tuberculin skin test. TB compatible lesions were detected in 21 wild boars, and Mycobacterium caprae was isolated in 17 of them with two different spoligotypes: SB0415 (13) and SB1908 (4). Only two goat herds showed TB positive animals that were subsequently slaughtered. M. caprae with the spoligotypes SB0416 and SB0415 were isolated from these animals. To investigate the phylogenetic relationships and the transmission chain of the outbreak, nine strains isolated from six wild boars and three goats of the study area were analysed by whole genome sequencing (WGS) followed by single nucleotide polymorphism (SNP) analysis by maximum likelihood and median-joining network inference methods. Results indicated that infected wild boars maintained M. caprae strains circulation in their own population and have likely transmitted the infection to goats, thus acting as TB reservoirs, compromising the success of livestock TB eradication campaigns and posing a risk for public health. The results also highlighted the usefulness of WGS followed by SNP analysis in providing relevant epidemiological information when detailed contact data are missing.

Indexed as

AnimalsAnimals, WildCattleCattle DiseasesGoat DiseasesGoatsMycobacterium tuberculosisPhylogenyPrevalenceSpainSus scrofaSwineSwine DiseasesTuberculosisWhole Genome SequencingepidemiologygoatsMycobacterium capraetuberculosiswhole genome sequencingwild boar

Identifiers

PMID32888386
PMCPMC8246549
OpenAlexW3083171131

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.