Evidence map›Paper›PMID 32887889›Full record

ArticleNature communications2020

Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.

Sara R Rashkin, Rebecca E Graff, Linda Kachuri, Khanh K Thai, Stacey E Alexeeff, Maruta A Blatchins, Taylor B Cavazos, Douglas A Corley, Nima C Emami, Joshua D Hoffman and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 179 papers, 21 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
179citing papers in PubMed, 21 pooled it
28.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

179 citing papers in PubMed, 21 syntheses or guidelines pooled it, 299 citations in OpenAlex.

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  10. Predicted Proteome Association Studies of Breast, Prostate, Ovarian, and Endometrial Cancers Implicate Plasma Protein Regulation in Cancer Susceptibility.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
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  15. Investigation of Shared Genetic Risk Factors Between Parkinson's Disease and Cancers.Movement disorders : official journal of the Movement Disorder Society · 2023
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119 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Sara R Rashkin *Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-5542-6891
Rebecca E Graff *Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0316-8303
Linda KachuriDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.
Khanh K ThaiDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Stacey E AlexeeffDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Maruta A BlatchinsDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Taylor B CavazosDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-3537-2608
Douglas A CorleyDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Nima C EmamiDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.
Joshua D HoffmanDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.
Eric JorgensonDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.ORCID http://orcid.org/0000-0002-5829-8191
Lawrence H KushiDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.ORCID http://orcid.org/0000-0001-9136-1175
Travis J MeyersDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.
Stephen K Van Den EedenDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.ORCID http://orcid.org/0000-0002-5599-8387
Elad ZivInstitute for Human Genetics, University of California, San Francisco, San Francisco, CA, USA.
Laurel A HabelDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA.
Thomas J HoffmannDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6893-4449
Lori C SakodaDivision of Research, Kaiser Permanente Northern California, Oakland, CA, USA. lori.sakoda@kp.org.ORCID http://orcid.org/0000-0002-0900-5735
John S WitteDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA. jwitte@ucsf.edu.
Kaiser Permanente · USUniversity of California, San Francisco · US

Funding

A Resource for Genetic Epidemiology Research in Adult Health and AgingRC2AG036607 · NIA · KAISER FOUNDATION RESEARCH INSTITUTE · PI RISCH, NEIL J., SCHAEFER, CATHERINE ANN · 2009 to 2010
$24.8M
Training in Molecular& Genetic Epidemiology of CancerR25CA112355 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTE, JOHN S. · 2005 to 2018
$6.5M
Genetic Epidemiology of Prostate Cancer Risk and ProgressionR01CA088164 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VAN DEN EEDEN, STEPHEN K., WITTE, JOHN S. · 2000 to 2015
$6.1M
Genomewide Association Study of Prostate CancerU01CA127298 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTE, JOHN S. · 2008 to 2012
$5.1M
Genome-wide Pleiotropy Scan across Multiple CancersR01CA201358 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRAFF, REBECCA ELIZABETH, SAKODA, LORI · 2016 to 2019
$2.5M
Genetics of mammographic density and breast cancer risk in LatinasK24CA169004 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZIV, ELAD · 2012 to 2021
$1.8M
Training in the Molecular & Genetic Epidemiology of CancerT32CA112355 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, IONA C, ZIV, ELAD · 2020 to 2024
$1.8M
Evaluating a Risk Prediction Model for Lung CancerK07CA188142 · NCI · KAISER FOUNDATION RESEARCH INSTITUTE · PI SAKODA, LORI · 2015 to 2019
$920k
NCI NIH HHS K07 CA188142NCI NIH HHS K24 CA169004NCI NIH HHS R01 CA088164NCI NIH HHS R01 CA201358NCI NIH HHS R25 CA112355NCI NIH HHS T32 CA112355NCI NIH HHS U01 CA127298NIA NIH HHS RC2 AG036607
6 · The paper itself

Abstract

Deciphering the shared genetic basis of distinct cancers has the potential to elucidate carcinogenic mechanisms and inform broadly applicable risk assessment efforts. Here, we undertake genome-wide association studies (GWAS) and comprehensive evaluations of heritability and pleiotropy across 18 cancer types in two large, population-based cohorts: the UK Biobank (408,786 European ancestry individuals; 48,961 cancer cases) and the Kaiser Permanente Genetic Epidemiology Research on Adult Health and Aging cohorts (66,526 European ancestry individuals; 16,001 cancer cases). The GWAS detect 21 genome-wide significant associations independent of previously reported results. Investigations of pleiotropy identify 12 cancer pairs exhibiting either positive or negative genetic correlations; 25 pleiotropic loci; and 100 independent pleiotropic variants, many of which are regulatory elements and/or influence cross-tissue gene expression. Our findings demonstrate widespread pleiotropy and offer further insight into the complex genetic architecture of cross-cancer susceptibility.

Indexed as

AdultAgedCarcinogenesisCase-Control StudiesFemaleGenetic PleiotropyGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMiddle AgedNeoplasmsPolymorphism, Single NucleotideRisk AssessmentRisk FactorsWhite People

Identifiers

PMID32887889
PMCPMC7473862
OpenAlexW3083488708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.