ArticlemBio2020
An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona.
Article in mBio, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
22 citing papers in PubMed.
- Investigation of SARS-CoV-2 Infection among Companion Animals in Households with Confirmed Human COVID-19 Cases.Pathogens (Basel, Switzerland) · 2024Article
- Pan-Enterovirus Characterization Reveals Cryptic Circulation of Clinically Relevant Subtypes in Arizona Wastewater.medRxiv : the preprint server for health sciences · 2024Article
- Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona.mSphere · 2023Article
- VGsim: Scalable viral genealogy simulator for global pandemic.PLoS computational biology · 2022Article
- Unlocking capacities of genomics for the COVID-19 response and future pandemics.Nature methods · 2022Article
- A Pre-Vaccination Baseline of SARS-CoV-2 Genetic Surveillance and Diversity in the United States.Viruses · 2022Article
- One health genomic surveillance and response to a university-based outbreak of the SARS-CoV-2 Delta AY.25 lineage, Arizona, 2021.PloS one · 2022Article
- Single-cell sequencing of brain tissues reveal the central nervous system's susceptibility to SARS-CoV-2 and the drug.Frontiers in pharmacology · 2022Article
- covSampler: A subsampling method with balanced genetic diversity for large-scale SARS-CoV-2 genome data sets.Virus evolution · 2022Article
- VGsim: scalable viral genealogy simulator for global pandemic.medRxiv : the preprint server for health sciences · 2021Article
- Unsupervised clustering analysis of SARS-Cov-2 population structure reveals six major subtypes at early stage across the world.bioRxiv : the preprint server for biology · 2021Article
- Finding the Middle Ground with the Clinical Laboratory's Role in SARS-CoV-2 Genomic Surveillance.Journal of clinical microbiology · 2021Article
- High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants.Water research · 2021Article
- One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021Review
- Molecular evidence of SARS-CoV-2 in New York before the first pandemic wave.Nature communications · 2021Article
- 2020 SARS-CoV-2 diversification in the United States: Establishing a pre-vaccination baseline.medRxiv : the preprint server for health sciences · 2021Article
- Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil.BMC genomics · 2021Article
- Article
- High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants.medRxiv : the preprint server for health sciences · 2021Article
- Methods for sequencing the pandemic: benefits of rapid or high-throughput processing.F1000Research · 2021Article
Corrections and comments
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Authors and funding
23 authors.
Funding
Abstract
In December of 2019, a novel coronavirus, SARS-CoV-2, emerged in the city of Wuhan, China, causing severe morbidity and mortality. Since then, the virus has swept across the globe, causing millions of confirmed infections and hundreds of thousands of deaths. To better understand the nature of the pandemic and the introduction and spread of the virus in Arizona, we sequenced viral genomes from clinical samples tested at the TGen North Clinical Laboratory, the Arizona Department of Health Services, and those collected as part of community surveillance projects at Arizona State University and the University of Arizona. Phylogenetic analysis of 84 genomes from across Arizona revealed a minimum of 11 distinct introductions inferred to have occurred during February and March. We show that >80% of our sequences descend from strains that were initially circulating widely in Europe but have since dominated the outbreak in the United States. In addition, we show that the first reported case of community transmission in Arizona descended from the Washington state outbreak that was discovered in late February. Notably, none of the observed transmission clusters are epidemiologically linked to the original travel-related case in the state, suggesting successful early isolation and quarantine. Finally, we use molecular clock analyses to demonstrate a lack of identifiable, widespread cryptic transmission in Arizona prior to the middle of February 2020.
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Registered trials
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