Evidence map›Paper›PMID 32887565›Full record

ArticleBMC medical genetics2020

Whole exome sequencing highlights variants in association with Keratoconus in Jordanian families.

Tawfiq Froukh, Ammar Hawwari, Khalid Al Zubi

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Whole-Exome Sequencing Implicates theFrontiers in cell and developmental biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Tawfiq FroukhDepartment of Biotechnology and Genetic Engineering, Philadelphia University, Jerash Road, Amman, 11118, Jordan. tfroukh@philadelphia.edu.jo.ORCID 0000-0002-2862-0733
Ammar HawwariSight and Insight Eye Clinic, Amman, Jordan.
Khalid Al ZubiFaculty of Medicine, Mutah University, Karak, Jordan.
Jordan Hospital · JOMutah University · JOPhiladelphia University · JO

Funding

philadelphia university N/A
6 · The paper itself

Abstract

backgroundKeratoconus (KC) is usually bilateral, noninflammatory progressive corneal ectasia in which the cornea becomes progressively thin and conical, resulting in myopia, irregular astigmatism, and corneal scarring.

methodsEight families characterized by consanguineous marriages and/or multiple keratoconic individuals were examined genetically. Whole exome sequencing was done as trio or quadro per family. The output of the filtration procedure, based on minor allele frequency (MAF) less than 0.01 for homozygous variants and MAF equals 0 for heterozygous variants, is 22 missense variants.

resultsBased on the gene/protein function five candidate variants were highlighted in four families. Two variants were highlighted in one family within the genes MYOF and STX2, and one variant is highlighted in each of the other three families within the genes: COL6A5, ZNF676 and ZNF765.

conclusionThis study is one of the very rare that highlights genetic variants in association with KC.

Indexed as

MutationCalcium-Binding ProteinsCollagen Type VIConsanguinityDNA-Binding ProteinsExome SequencingFamily HealthFemaleGenetic Predisposition to DiseaseHumansJordanKeratoconusMaleMembrane ProteinsMuscle ProteinsPedigreeCalcium-Binding ProteinsCOL6A5 protein, humanCollagen Type VIDNA-Binding ProteinsMembrane ProteinsMuscle ProteinsMYOF protein, humanSTX2 protein, humanSyntaxin 1ZNF676 protein, humanDry-eyeEpithelialGenomeNGSOcular

Identifiers

PMID32887565
PMCPMC7650294
OpenAlexW3083308419

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.