Evidence map›Paper›PMID 32886328›Full record

ArticleMolecular biology reports2020

Genome- wide structural and functional variant discovery of rice landraces using genotyping by sequencing.

Smitha Kunhiraman Vasumathy, Maya Peringottillam, Krishna T Sundaram, S Hari Krishna Kumar, Manickavelu Alagu

Abstract read
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In one paragraph

Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Smitha Kunhiraman VasumathyDepartment of Genomic Science, Central University of Kerala, Kasaragod, Kerala, 671316, India.
Maya PeringottillamDepartment of Genomic Science, Central University of Kerala, Kasaragod, Kerala, 671316, India.
Krishna T SundaramSouth Asia hub, ICRISAT Campus, International Rice Research Institute, Secundarabad, Telangana, India.
S Hari Krishna KumarDepartment of Genomic Science, Central University of Kerala, Kasaragod, Kerala, 671316, India.
Manickavelu AlaguDepartment of Genomic Science, Central University of Kerala, Kasaragod, Kerala, 671316, India. amanicks@cukerala.ac.in.ORCID http://orcid.org/0000-0003-2875-2290
Central University of Kerala · INInternational Crops Research Institute for the Semi-Arid Tropics · IN

Funding

Science and Engineering Research Board ECR/2016/001934
6 · The paper itself

Abstract

Rice landraces are vital genetic resources for agronomic and quality traits but the undeniable collection of Kerala landraces remains poorly delineated. To effectively conserve, manage, and use these resources, understanding the genomic structure of germplasm is essential. Genotyping by sequencing (GBS) enables identification of an immense number of single nucleotide polymorphism (SNP) and insertion deletion (InDel) from 96 rice germplasm. In the present study, a total of 16.9 × 10

Indexed as

Genome, PlantGenotypeINDEL MutationPolymorphism, Single NucleotideGenome-Wide Association StudyOryzaGene ontologyGenotyping by sequencingInDelRice landracesSNPUnmapped sequences

Identifiers

PMID32886328
OpenAlexW3083254170

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.