Evidence map›Paper›PMID 32884054›Full record

ArticleScientific reports2020

Transcriptomic analysis of a Clostridium thermocellum strain engineered to utilize xylose: responses to xylose versus cellobiose feeding.

Albert E Tafur Rangel, Trevor Croft, Andrés Fernando González Barrios, Luis H Reyes, Pin-Ching Maness, Katherine J Chou

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Utilization of Monosaccharides byMicroorganisms · 2021
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Albert E Tafur RangelGrupo de Diseño de Productos Y Procesos (GDPP), Department of Chemical and Food Engineering, Universidad de los Andes, Bogotá, Colombia.
Trevor CroftBiosciences Center, National Renewable Energy Laboratory, Golden, CO, USA.
Andrés Fernando González BarriosGrupo de Diseño de Productos Y Procesos (GDPP), Department of Chemical and Food Engineering, Universidad de los Andes, Bogotá, Colombia.
Luis H ReyesGrupo de Diseño de Productos Y Procesos (GDPP), Department of Chemical and Food Engineering, Universidad de los Andes, Bogotá, Colombia. lh.reyes@uniandes.edu.co.
Pin-Ching ManessBiosciences Center, National Renewable Energy Laboratory, Golden, CO, USA. PinChing.Maness@nrel.gov.
Katherine J ChouBiosciences Center, National Renewable Energy Laboratory, Golden, CO, USA. Katherine.chou@nrel.gov.
National Renewable Energy Laboratory · USUniversidad de Los Andes · COPopular University of Cesar · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium (Ruminiclostridium) thermocellum is recognized for its ability to ferment cellulosic biomass directly, but it cannot naturally grow on xylose. Recently, C. thermocellum (KJC335) was engineered to utilize xylose through expressing a heterologous xylose catabolizing pathway. Here, we compared KJC335's transcriptomic responses to xylose versus cellobiose as the primary carbon source and assessed how the bacteria adapted to utilize xylose. Our analyses revealed 417 differentially expressed genes (DEGs) with log

Indexed as

Acetivibrio thermocellusBacterial ProteinsCellobioseCelluloseGene Expression Regulation, BacterialPolysaccharidesTranscriptomeXyloseBacterial ProteinsCellobioseCellulosehemicellulosePolysaccharidesXylose

Identifiers

PMID32884054
PMCPMC7471329
OpenAlexW3082788167

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.