Evidence map›Paper›PMID 32883963›Full record

ArticleScientific reports2020

Genotype-phenotype correlation of β-lactamase-producing uropathogenic Escherichia coli (UPEC) strains from Bangladesh.

Maqsud Hossain, Tahmina Tabassum, Aura Rahman, Arman Hossain, Tamanna Afroze, Abdul Mueed Ibne Momen, Abdus Sadique, Mrinmoy Sarker, Fariza Shams, Ahmed Ishtiaque and 5 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Maqsud HossainNSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Tahmina Tabassum *NSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Aura Rahman *NSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Arman HossainNSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Tamanna AfrozeNSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Abdul Mueed Ibne MomenNSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Abdus SadiqueNSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Mrinmoy SarkerDepartment of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Fariza ShamsDepartment of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Ahmed IshtiaqueDepartment of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Abdul KhalequeDepartment of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Munirul AlamInternational Centre for Diarrheal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.
Anwar HuqMaryland Pathogen Research Institute, University of Maryland, College Park, MD, USA.
Gias U AhsanNSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.
Rita R ColwellMaryland Pathogen Research Institute, University of Maryland, College Park, MD, USA. rcolwell@umiacs.umd.edu.
North South University · BDUniversity of Maryland, College Park · USInternational Centre for Diarrhoeal Disease Research · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli is a pathogen commonly encountered in clinical laboratories, and is capable of causing a variety of diseases, both within the intestinal tract (intestinal pathogenic strains) and outside (extraintestinal pathogenic E. coli, or ExPEC). It is associated with urinary tract infections (UTIs), one of the most common infectious diseases in the world. This report represents the first comparative analysis of the draft genome sequences of 11 uropathogenic E. coli (UPEC) strains isolated from two tertiary hospitals located in Dhaka and Sylhet, Bangladesh, and is focused on comparing their genomic characteristics to each other and to other available UPEC strains. Multilocus sequence typing (MLST) confirmed the strains belong to ST59, ST131, ST219, ST361, ST410, ST448 and ST4204, with one of the isolates classified as a previously undocumented ST. De novo identification of the antibiotic resistance genes bla

Indexed as

Bangladeshbeta-LactamasesGenotypeMultilocus Sequence TypingPhenotypeUropathogenic Escherichia colibeta-Lactamases

Identifiers

PMID32883963
PMCPMC7471317
OpenAlexW3081936413

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.