Evidence map›Paper›PMID 32880825›Full record

ArticleHuman cell2020

The interaction between MALAT1 target, miR-143-3p, and RALGAPA2 is affected by functional SNP rs3827693 in breast cancer.

Nasrin Fattahi Dolatabadi, Arezo Dehghani, Elham Shahand, Mohammadreza Yazdanshenas, Hossein Tabatabaeian, Atefe Zamani, Mansoureh Azadeh, Kamran Ghaedi

Abstract read
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In one paragraph

Article in Human cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Article
  5. Review
  6. MIMT1 and LINC01550 are uncharted lncRNAs down-regulated in colorectal cancer.International journal of experimental pathology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Review
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  15. Single Nucleotide Polymorphisms of PorcineFrontiers in cell and developmental biology · 2021
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Nasrin Fattahi Dolatabadi *Zist-Fanavari Novin Biotechnology Institute, Isfahan, Iran.
Arezo Dehghani *Zist-Fanavari Novin Biotechnology Institute, Isfahan, Iran.
Elham Shahand *Zist-Fanavari Novin Biotechnology Institute, Isfahan, Iran.
Mohammadreza Yazdanshenas *Zist-Fanavari Novin Biotechnology Institute, Isfahan, Iran.
Hossein TabatabaeianDepartment of Cell and Molecular Biology and Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran. csiht@nus.edu.sg.ORCID http://orcid.org/0000-0001-9757-6150
Atefe ZamaniZist-Fanavari Novin Biotechnology Institute, Isfahan, Iran.
Mansoureh AzadehZist-Fanavari Novin Biotechnology Institute, Isfahan, Iran.
Kamran GhaediDepartment of Cell and Molecular Biology and Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran. kamranghaedi@sci.ui.ac.ir.
Isfahan University of Technology · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A higher expression of MALAT1 has been reported in breast cancer. However, more studies are needed to decipher the mechanisms by which this lncRNA imposes its oncogenic effects. In this study, blood and tissue samples were taken from healthy normal and breast cancer subjects. qPCR was used to analyze the gene expression. HRM-PCR method was carried out to genotype the selected samples. Computational analysis was recruited to find novel targets of MALAT1 and miR-143-3p. The data analyses revealed that MALAT1 was up-regulated in breast cancer and could be a distinctive factor to diagnose cancer. The expression of MALAT1 was inversely correlated with miR-143-3p expression in the studied clinical samples. The down-regulation of miR-143-3p was proven in the clinical tumor samples as compared to the healthy controls. A negative correlation of miR-143-3p with its putative target, RALGAPA2 was observed. A functional SNP rs3827693 located within the 3'UTR region of RALGAPA2 mRNA was validated in this study to associate with breast cancer risk. The rs3827693 allele G significantly decreased the breast cancer incidence and augmented the negative correlation between RALGAPA2 and miR-143-3p, presumably through strengthening the interaction between these two transcripts. This study proposed MALAT1 miR-143-3p and miR-143-3p RALGAPA2 axis in breast cancer, whereby the latter can be altered by the clinically functional SNP rs3827693.

Indexed as

Gene ExpressionPolymorphism, Single NucleotideAdultAgedBreast NeoplasmsEpistasis, GeneticFemaleGene Expression Regulation, NeoplasticGenotypeGTPase-Activating ProteinsHumansMicroRNAsMiddle AgedRNA, Long NoncodingUp-RegulationGTPase-Activating ProteinsMALAT1 long non-coding RNA, humanMicroRNAsMIRN143 microRNA, humanRALGAPA2 protein, humanRNA, Long NoncodingBreast cancerGenotypinglncRNAmiRNASNP

Identifiers

PMID32880825
OpenAlexW3083181643

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.