Evidence map›Paper›PMID 32880586›Full record

ArticleActa crystallographica. Section F, Structural biology communications2020

Detecting the nature and solving the crystal structure of a contaminant protein from an opportunistic pathogen.

Riccardo Pederzoli, Delia Tarantino, Louise J Gourlay, Antonio Chaves-Sanjuan, Martino Bolognesi

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  2. Article
  3. Contamination or serendipity - doing the wrong thing by chance.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Riccardo PederzoliHamburg Unit c/o DESY, European Molecular Biology Laboratory, Notkestrasse 85, 22603 Hamburg, Germany.ORCID 0000-0002-2286-9538
Delia TarantinoDepartment of Biosciences, University of Milano, Via Celoria 26, 20133 Milano, Italy.
Louise J GourlayDepartment of Biosciences, University of Milano, Via Celoria 26, 20133 Milano, Italy.ORCID 0000-0002-6369-2230
Antonio Chaves-SanjuanDepartment of Biosciences, University of Milano, Via Celoria 26, 20133 Milano, Italy.ORCID 0000-0003-3287-9024
Martino BolognesiDepartment of Biosciences, University of Milano, Via Celoria 26, 20133 Milano, Italy.ORCID 0000-0002-9253-5170
University of Milan · ITEuropean Molecular Biology Laboratory · DE

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca 2015JTL4HL
6 · The paper itself

Abstract

The unintentional crystallization of contaminant proteins in the place of target recombinant proteins is sporadically reported, despite the availability of stringent expression/purification protocols and of software for the detection of contaminants. Typically, the contaminant protein originates from the expression organism (for example Escherichia coli), but in rare circumstances contaminants from different sources have been reported. Here, a case of contamination from a Serratia bacterial strain that occurred while attempting to crystallize an unrelated protein from Burkholderia pseudomallei (overexpressed in E. coli) is presented. The contamination led to the unintended crystallization and structure analysis of a cyanase hydratase from a bacterial strain of the Serratia genus, an opportunistic enterobacterium that grows under conditions similar to those of E. coli and that is found in a variety of habitats, including the laboratory environment. In this context, the procedures that were adopted to identify the contaminant based on crystallographic data only are presented and the crystal structure of Serrata spp. cyanase hydratase is briefly discussed.

Indexed as

ArtifactsBinding SitesBurkholderia pseudomalleiCrystallography, X-RayCyanatesEscherichia coliGene ExpressionHumansHydro-LyasesModels, MolecularProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsProtein MultimerizationRecombinant ProteinsCyanatesHydro-LyasesRecombinant Proteinscontaminant proteinscyanase hydrataseSerratia

Identifiers

PMID32880586
PMCPMC7470038
OpenAlexW3082044278

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.