Evidence map›Paper›PMID 32880430›Full record

ArticleACS chemical biology2020

Unraveling the Mechanism of a LOV Domain Optogenetic Sensor: A Glutamine Lever Induces Unfolding of the Jα Helix.

James N Iuliano, Jinnette Tolentino Collado, Agnieszka A Gil, Pavithran T Ravindran, Andras Lukacs, SeungYoun Shin, Helena A Woroniecka, Katrin Adamczyk, James M Aramini, Uthama R Edupuganti and 11 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  6. Hydraulic Activation of the AsLOV2 Photoreceptor.bioRxiv : the preprint server for biology · 2025
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  18. Allosteric inactivation of an engineered optogenetic GTPase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 3 countries.

James N IulianoDepartment of Chemistry, Stony Brook University, New York, 11794, United States.ORCID 0000-0003-1213-3292
Jinnette Tolentino ColladoDepartment of Chemistry, Stony Brook University, New York, 11794, United States.
Agnieszka A GilDepartment of Molecular Biology, Princeton University, Princeton, New Jersey 08544, United States.ORCID 0000-0001-7583-3080
Pavithran T RavindranDepartment of Molecular Biology, Princeton University, Princeton, New Jersey 08544, United States.
Andras LukacsSchool of Chemistry, University of East Anglia, Norwich, NR4 7TJ, United Kingdom.
SeungYoun ShinDepartment of Chemistry, Stony Brook University, New York, 11794, United States.
Helena A WoronieckaDepartment of Chemistry, Stony Brook University, New York, 11794, United States.
Katrin AdamczykSchool of Chemistry, University of East Anglia, Norwich, NR4 7TJ, United Kingdom.
James M AraminiStructural Biology Initiative, CUNY Advanced Science Research Center, 85 St. Nicholas Terrace, New York, New York 10031, United States.
Uthama R EdupugantiStructural Biology Initiative, CUNY Advanced Science Research Center, 85 St. Nicholas Terrace, New York, New York 10031, United States.
Christopher R HallSchool of Chemistry, University of East Anglia, Norwich, NR4 7TJ, United Kingdom.
Gregory M GreethamCentral Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0QX, United Kingdom.
Igor V SazanovichCentral Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0QX, United Kingdom.
Ian P ClarkCentral Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0QX, United Kingdom.
Taraneh DaryaeeDepartment of Chemistry, Stony Brook University, New York, 11794, United States.
Jared E ToettcherDepartment of Molecular Biology, Princeton University, Princeton, New Jersey 08544, United States.ORCID 0000-0002-1546-4030
Jarrod B FrenchDepartment of Chemistry, Stony Brook University, New York, 11794, United States.ORCID 0000-0002-6762-1309
Kevin H GardnerStructural Biology Initiative, CUNY Advanced Science Research Center, 85 St. Nicholas Terrace, New York, New York 10031, United States.ORCID 0000-0002-8671-2556
Carlos L SimmerlingDepartment of Chemistry, Stony Brook University, New York, 11794, United States.ORCID 0000-0002-7252-4730
Stephen R MeechSchool of Chemistry, University of East Anglia, Norwich, NR4 7TJ, United Kingdom.ORCID 0000-0001-5561-2782
Peter J TongeDepartment of Chemistry, Stony Brook University, New York, 11794, United States.ORCID 0000-0003-1606-3471
Stony Brook University · USUniversity of East Anglia · GBPrinceton University · USRutherford Appleton Laboratory · GBThe Graduate Center, CUNY · USUniversity of Minnesota · US

Funding

Summer Undergraduate Research Support - Ms. Anastasiia FisiukR01GM106239 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARDNER, KEVIN H · 2013 to 2024
$4.5M
Harnessing optogenetics to diagnose and therapeutically rewire cancer cell signalingDP2EB024247 · NIBIB · PRINCETON UNIVERSITY · PI TOETTCHER, JARED E · 2016 to 2016
$2.4M
SBU Chemistry-Biology Interface Training ProgramT32GM092714 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S, TONGE, PETER J · 2010 to 2019
$1.7M
Stony Brook University MERGE: Maximizing Excellence in Research and Graduate EduR25GM103962 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GERGEN, JOHN PETER, SPERZEL, TONI · 2014 to 2018
$1.4M
Extracellular optogenetic control in the study of epithelial collective cell signalingF32GM128304 · NIGMS · PRINCETON UNIVERSITY · PI GIL, AGNIESZKA · 2018 to 2020
$142k
NIBIB NIH HHS DP2 EB024247NIGMS NIH HHS F32 GM128304NIGMS NIH HHS R01 GM106239NIGMS NIH HHS R25 GM103962NIGMS NIH HHS T32 GM092714
6 · The paper itself

Abstract

Light-activated protein domains provide a convenient, modular, and genetically encodable sensor for optogenetics and optobiology. Although these domains have now been deployed in numerous systems, the precise mechanism of photoactivation and the accompanying structural dynamics that modulate output domain activity remain to be fully elucidated. In the C-terminal light-oxygen-voltage (LOV) domain of plant phototropins (LOV2), blue light activation leads to formation of an adduct between a conserved Cys residue and the embedded FMN chromophore, rotation of a conserved Gln (Q513), and unfolding of a helix (Jα-helix) which is coupled to the output domain. In the present work, we focus on the allosteric pathways leading to Jα helix unfolding in

Indexed as

AvenaFlavin MononucleotideGlutamineHydrogen BondingLightMembrane ProteinsMolecular Dynamics SimulationMutagenesis, Site-DirectedMutationOptogeneticsPhototropinsProtein BindingProtein Conformation, alpha-HelicalProtein DomainsProtein MultimerizationProtein UnfoldingFlavin MononucleotideGlutamineMembrane ProteinsPhototropins

Identifiers

PMID32880430
PMCPMC7572778
OpenAlexW3083165499

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.