Evidence map›Paper›PMID 32879332›Full record

ArticleScientific reports2020

Recombination at the emergence of the pathogenic rabbit haemorrhagic disease virus Lagovirus europaeus/GI.2.

Joana Abrantes, Clément Droillard, Ana M Lopes, Evelyne Lemaitre, Pierrick Lucas, Yannick Blanchard, Stéphane Marchandeau, Pedro J Esteves, Ghislaine Le Gall-Reculé

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
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  7. Domestic European RabbitsTransboundary and emerging diseases · 2025
    Article
  8. Article
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  10. Rabbit hemorrhagic disease virus 2, 2010-2023: a review of global detections and affected species.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
    Review
  11. Article
  12. Characterisation ofInternational journal of molecular sciences · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Joana AbrantesCIBIO/InBio-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Research Network in Biodiversity and Evolutionary Biology, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661, Vairão, Portugal. jabrantes@cibio.up.pt.
Clément DroillardUnité de Virologie, Immunologie, Parasitologie, Aviaires et Cunicoles, Laboratoire de Ploufragan-Plouzané-Niort, Agence nationale de sécurité sanitaire, de l'alimentation, de l'environnement et du travail (Anses), Ploufragan, France.
Ana M LopesCIBIO/InBio-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Research Network in Biodiversity and Evolutionary Biology, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661, Vairão, Portugal.
Evelyne LemaitreUnité de Virologie, Immunologie, Parasitologie, Aviaires et Cunicoles, Laboratoire de Ploufragan-Plouzané-Niort, Agence nationale de sécurité sanitaire, de l'alimentation, de l'environnement et du travail (Anses), Ploufragan, France.
Pierrick LucasUnité de Génétique Virale et Biosécurité, Laboratoire de Ploufragan-Plouzané-Niort, Agence nationale de sécurité sanitaire, de l'alimentation, de l'environnement et du travail (Anses), Ploufragan, France.
Yannick BlanchardUnité de Génétique Virale et Biosécurité, Laboratoire de Ploufragan-Plouzané-Niort, Agence nationale de sécurité sanitaire, de l'alimentation, de l'environnement et du travail (Anses), Ploufragan, France.
Stéphane MarchandeauUnité Petite Faune Sédentaire et Espèces Outre-Mer, Direction de la Recherche et de l'Appui Scientifique, Office Français de la Biodiversité (OFB), Nantes, France.
Pedro J EstevesCIBIO/InBio-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Research Network in Biodiversity and Evolutionary Biology, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661, Vairão, Portugal.
Ghislaine Le Gall-ReculéUnité de Virologie, Immunologie, Parasitologie, Aviaires et Cunicoles, Laboratoire de Ploufragan-Plouzané-Niort, Agence nationale de sécurité sanitaire, de l'alimentation, de l'environnement et du travail (Anses), Ploufragan, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rabbit haemorrhagic disease is a viral disease that emerged in the 1980s and causes high mortality and morbidity in the European rabbit (Oryctolagus cuniculus). In 2010, a new genotype of the rabbit haemorrhagic disease virus emerged and replaced the former circulating Lagovirus europaeus/GI.1 strains. Several recombination events have been reported for the new genotype Lagovirus europaeus/GI.2, with pathogenic (variants GI.1a and GI.1b) and benign (genotype GI.4) strains that served as donors for the non-structural part while GI.2 composed the structural part; another recombination event has also been described at the p16/p23 junction involving GI.4 strains. In this study, we analysed new complete coding sequences of four benign GI.3 strains and four GI.2 strains. Phylogenetic and recombination detection analyses revealed that the first GI.2 strains, considered as non-recombinant, resulted from a recombination event between GI.3 and GI.2, with GI.3 as the major donor for the non-structural part and GI.2 for the structural part. Our results indicate that recombination contributed to the emergence, persistence and dissemination of GI.2 as a pathogenic form and that all described GI.2 strains so far are the product of recombination. This highlights the need to study full-genomic sequences of lagoviruses to understand their emergence and evolution.

Indexed as

PhylogenyRecombination, GeneticAnimalsCaliciviridae InfectionsCapsidFranceGenome, ViralGenotypeHemorrhagic Disease Virus, RabbitLikelihood FunctionsRabbits

Identifiers

PMID32879332
PMCPMC7468141

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.