Evidence map›Paper›PMID 32878989›Full record

ArticleThe Journal of biological chemistry2020

An autoinhibitory role for the GRF zinc finger domain of DNA glycosylase NEIL3.

Alyssa A Rodriguez, Jessica L Wojtaszek, Briana H Greer, Tuhin Haldar, Kent S Gates, R Scott Williams, Brandt F Eichman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  5. Article
  6. Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025
    Review
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  8. Review
  9. Article
  10. Review
  11. Article
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  13. Article
  14. Article
  15. Noncatalytic Domains in DNA Glycosylases.International journal of molecular sciences · 2022
    Review
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alyssa A RodriguezDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Jessica L WojtaszekGenome Integrity and Structural Biology Laboratory, NIEHS, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, North Carolina, USA.
Briana H GreerDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Tuhin HaldarDepartment of Chemistry, University of Missouri, Columbia, Missouri, USA.
Kent S GatesDepartment of Chemistry, University of Missouri, Columbia, Missouri, USA.
R Scott WilliamsGenome Integrity and Structural Biology Laboratory, NIEHS, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, North Carolina, USA. Electronic address: williamsrs@niehs.nih.gov.
Brandt F EichmanDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA. Electronic address: brandt.eichman@vanderbilt.edu.
Vanderbilt University · USNational Institutes of Health · USUniversity of Missouri · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
The DNA replication-repair interface: mechanisms and regulationR35GM136401 · NIGMS · VANDERBILT UNIVERSITY · PI Brandt F Eichman · 2020 to 2026
$4.3M
Mechanisms of DNA glycosylase mediated interstrand crosslink repairR01GM131071 · NIGMS · VANDERBILT UNIVERSITY · PI EICHMAN, BRANDT F · 2019 to 2019
$465k
NCI NIH HHS P01 CA092584NIGMS NIH HHS R01 GM131071NIGMS NIH HHS R35 GM136401NIGMS NIH HHS T32 GM008320
6 · The paper itself

Abstract

The NEIL3 DNA glycosylase maintains genome integrity during replication by excising oxidized bases from single-stranded DNA (ssDNA) and unhooking interstrand cross-links (ICLs) at fork structures. In addition to its N-terminal catalytic glycosylase domain, NEIL3 contains two tandem C-terminal GRF-type zinc fingers that are absent in the other NEIL paralogs. ssDNA binding by the GRF-ZF motifs helps recruit NEIL3 to replication forks converged at an ICL, but the nature of DNA binding and the effect of the GRF-ZF domain on catalysis of base excision and ICL unhooking is unknown. Here, we show that the tandem GRF-ZFs of NEIL3 provide affinity and specificity for DNA that is greater than each individual motif alone. The crystal structure of the GRF domain shows that the tandem ZF motifs adopt a flexible head-to-tail configuration well-suited for binding to multiple ssDNA conformations. Functionally, we establish that the NEIL3 GRF domain inhibits glycosylase activity against monoadducts and ICLs. This autoinhibitory activity contrasts GRF-ZF domains of other DNA-processing enzymes, which typically use ssDNA binding to enhance catalytic activity, and suggests that the C-terminal region of NEIL3 is involved in both DNA damage recruitment and enzymatic regulation.

Indexed as

Amino Acid SequenceAnimalsCrystallography, X-RayDNADNA ReplicationDNA, Single-StrandedHumansMiceN-Glycosyl HydrolasesProtein BindingProtein Structure, TertiarySequence AlignmentZinc FingersDNADNA, Single-StrandedNEIL3 protein, humanN-Glycosyl Hydrolasesbase excision repair (BER)crystallographyDNA-binding proteinDNA damageDNA glycosylaseDNA–protein interactionDNA repairGRFinterstrand DNA cross-linknucleic acid enzymologyX-ray crystallographyzinc finger

Identifiers

PMID32878989
PMCPMC7667957
OpenAlexW3081765743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.