Evidence map›Paper›PMID 32878886›Full record

ArticleJournal of virology2020

RUNX Binding Sites Are Enriched in Herpesvirus Genomes, and RUNX1 Overexpression Leads to Herpes Simplex Virus 1 Suppression.

Daniel J Kim, William Khoury-Hanold, Priyanka Caroline Jain, Jonathan Klein, Yong Kong, Scott D Pope, William Ge, Ruslan Medzhitov, Akiko Iwasaki

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Opposing fates: a bipolar cellular model for FMDV replication shaped byFrontiers in cellular and infection microbiology · 2025
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  3. Current drug discovery technologies · 2025
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  5. Pioneer factors in viral infection.Frontiers in immunology · 2023
    Review
  6. Article
  7. Antiviral Effect of Polyphenolic Substances inEvidence-based complementary and alternative medicine : eCAM · 2022
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Daniel J KimDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
William Khoury-HanoldDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
Priyanka Caroline JainDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
Jonathan KleinDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
Yong KongDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
Scott D PopeDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
William GeDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
Ruslan MedzhitovDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
Akiko IwasakiDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA akiko.iwasaki@yale.edu.ORCID 0000-0002-7824-9856
Yale University · USHoward Hughes Medical Institute · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Medical Scientist Training ProgramT32GM136651 · NIGMS · YALE UNIVERSITY · PI BARBARA I KAZMIERCZAK · 2020 to 2026
$16.5M
TRAINING PROGRAM IN INVESTIGATIVE GASTROENTEROLOGYT32DK007017 · NIDDK · YALE UNIVERSITY · PI Fred Sanford Gorelick, Liza Konnikova · 1986 to 2026
$7.1M
Immunity to Genital Herpes Simplex-2R01AI054359 · NIAID · YALE UNIVERSITY · PI IWASAKI, AKIKO · 2004 to 2019
$5.2M
Molecular and Cellular Transport in MucusR01EB000487 · NIBIB · YALE UNIVERSITY · PI IWASAKI, AKIKO, SALTZMAN, W. MARK · 2002 to 2019
$5.0M
Predoctoral Training Program in VirologyT32AI055403 · NIAID · YALE UNIVERSITY · PI KUMAR, PRITI, MOTHES, WALTHER H · 2003 to 2024
$3.6M
B cell based protection against recurrent herpesR01AI127429 · NIAID · YALE UNIVERSITY · PI IWASAKI, AKIKO · 2017 to 2021
$2.1M
Innate antiviral defense against Vaginal transmission of ZIKA virusR21AI131284 · NIAID · YALE UNIVERSITY · PI IWASAKI, AKIKO · 2017 to 2018
$461k
Molecular and Cellular Transport in MucusR56EB000487 · NIBIB · YALE UNIVERSITY · PI SALTZMAN, W. MARK · 2008 to 2008
$402k
Exploring the Innate Sensors Underlying Cancer ImmunosurveillanceF30CA236466 · NCI · YALE UNIVERSITY · PI KIM, DANIEL J · 2019 to 2021
$111k
Howard Hughes Medical InstituteNCI NIH HHS F30 CA236466NIAID NIH HHS R01 AI054359NIAID NIH HHS R01 AI127429NIAID NIH HHS R21 AI131284NIAID NIH HHS T32 AI055403NIBIB NIH HHS R01 EB000487NIBIB NIH HHS R56 EB000487NIDDK NIH HHS T32 DK007017NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM136651
6 · The paper itself

Abstract

Herpes simplex virus 1 (HSV-1) and HSV-2 can efficiently establish lifelong, transcriptionally silent latency states in sensory neurons to escape host detection. While host factors have previously been associated with long-range insulators in the viral genome, it is still unknown whether host transcription factors can repress viral genes more proximately to promote latency in dorsal root ganglion (DRG) neurons. Here, we assessed whether RUNX (runt-related transcription factor) transcription factors, which are critical in the development of sensory neurons, could be binding HSV-1 genome directly to suppress viral gene expression and lytic infection. Using previously published transcriptome sequencing data, we confirmed that mouse DRG neurons highly express

Indexed as

AnimalsBinding SitesCore Binding Factor Alpha 2 SubunitGanglia, SpinalGene Expression Regulation, ViralGene Knockdown TechniquesGenome, ViralHEK293 CellsHerpes SimplexHerpesviridaeHerpesvirus 1, HumanHumansMiceSensory Receptor CellsTrigeminal GanglionVirus ActivationCore Binding Factor Alpha 2 SubunitRUNX1 protein, humanRunx1 protein, mouseherpesvirusestranscriptional repressionvirus-host interactions

Identifiers

PMID32878886
PMCPMC7592204
OpenAlexW3082729196

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.