Evidence map›Paper›PMID 32876753›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2020

Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops.

Dorcus C Gemenet, Hannele Lindqvist-Kreuze, Bert De Boeck, Guilherme da Silva Pereira, Marcelo Mollinari, Zhao-Bang Zeng, G Craig Yencho, Hugo Campos

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Towards a sweetpotato genomic-enabled breeding: optimizing two-stage analysis of multi-environment augmented trials.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  5. Review
  6. Article
  7. PotatoMASH is a cost-effective marker system for genomic prediction in potato based on short-read haplotypes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Potato and sweetpotato breeding at the international potato center: approaches, outcomes and the way forward.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Dorcus C GemenetInternational Potato Center, ILRI Campus, P.O. Box 25171-00603, Nairobi, Kenya. d.gemenet@cgiar.org.ORCID http://orcid.org/0000-0003-4901-1694
Hannele Lindqvist-KreuzeInternational Potato Center, Av. La Molina 1895, Lima, Peru.
Bert De BoeckInternational Potato Center, Av. La Molina 1895, Lima, Peru.
Guilherme da Silva PereiraNorth Carolina State University, Raleigh, NC, 27695, USA.
Marcelo MollinariNorth Carolina State University, Raleigh, NC, 27695, USA.
Zhao-Bang ZengNorth Carolina State University, Raleigh, NC, 27695, USA.
G Craig YenchoNorth Carolina State University, Raleigh, NC, 27695, USA.
Hugo CamposInternational Potato Center, Av. La Molina 1895, Lima, Peru.
North Carolina State University · USInternational Potato Center · PEInternational Potato Center · KE

Funding

Bill and Melinda Gates Foundation OPP1052983
6 · The paper itself

Abstract

key messagePolypoid crop breeders can balance resources between density and sequencing depth, dosage information and fewer highly informative SNPs recommended, non-additive models and QTL advantages on prediction dependent on trait architecture. The autopolyploid nature of potato and sweetpotato ensures a wide range of meiotic configurations and linkage phases leading to complex gene-action and pose problems in genotype data quality and genomic selection analyses. We used a 315-progeny biparental F

Indexed as

GenotypePlant BreedingPolymorphism, Single NucleotidePolyploidySelection, GeneticCrops, AgriculturalIpomoea batatasPhenotypeQuantitative Trait LociSequence Analysis, DNA

Identifiers

PMID32876753
PMCPMC7567692
OpenAlexW3082037212

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.