Evidence map›Paper›PMID 32876062›Full record

ArticleActa crystallographica. Section D, Structural biology2020

An epoxide hydrolase from endophytic Streptomyces shows unique structural features and wide biocatalytic activity.

Gabriela D Tormet-González, Carolina Wilson, Gabriel Stephani de Oliveira, Jademilson Celestino Dos Santos, Luciana G de Oliveira, Marcio Vinicius Bertacine Dias

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Gabriela D Tormet-GonzálezDepartment of Organic Chemistry, Institute of Chemistry, University of Campinas, Campinas-SP 3083-970, Brazil.ORCID 0000-0002-9118-8568
Carolina WilsonDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, Avenida Prof. Lineu Prestes 1374, São Paulo-SP 05508-000, Brazil.
Gabriel Stephani de OliveiraDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, Avenida Prof. Lineu Prestes 1374, São Paulo-SP 05508-000, Brazil.ORCID 0000-0002-9261-0310
Jademilson Celestino Dos SantosDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, Avenida Prof. Lineu Prestes 1374, São Paulo-SP 05508-000, Brazil.ORCID 0000-0003-4611-951X
Luciana G de OliveiraDepartment of Organic Chemistry, Institute of Chemistry, University of Campinas, Campinas-SP 3083-970, Brazil.ORCID 0000-0003-4484-0637
Marcio Vinicius Bertacine DiasDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, Avenida Prof. Lineu Prestes 1374, São Paulo-SP 05508-000, Brazil.ORCID 0000-0002-5312-0191
Universidade de São Paulo · BRUniversidade Estadual de Campinas (UNICAMP) · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 302848/2017-7Conselho Nacional de Desenvolvimento Científico e Tecnológico 313492/2017-4Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 001Fundação de Amparo à Pesquisa do Estado de São Paulo 2010/15971-3Fundação de Amparo à Pesquisa do Estado de São Paulo 2011/06209-3Fundação de Amparo à Pesquisa do Estado de São Paulo 2013/26242-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/12727-5Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/50249-8Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/09188-8Fundação de Amparo à Pesquisa do Estado de São Paulo 2018/00351-1
6 · The paper itself

Abstract

The genus Streptomyces is characterized by the production of a wide variety of secondary metabolites with remarkable biological activities and broad antibiotic capabilities. The presence of an unprecedented number of genes encoding hydrolytic enzymes with industrial appeal such as epoxide hydrolases (EHs) reveals its resourceful microscopic machinery. The whole-genome sequence of Streptomyces sp. CBMAI 2042, an endophytic actinobacterium isolated from Citrus sinensis branches, was explored by genome mining, and a putative α/β-epoxide hydrolase named B1EPH2 and encoded by 344 amino acids was selected for functional and structural studies. The crystal structure of B1EPH2 was obtained at a resolution of 2.2 Å and it was found to have a similar fold to other EHs, despite its hexameric quaternary structure, which contrasts with previously solved dimeric and monomeric EH structures. While B1EPH2 has a high sequence similarity to EHB from Mycobacterium tuberculosis, its cavity is similar to that of human EH. A group of 12 aromatic and aliphatic racemic epoxides were assayed to determine the activity of B1EPH2; remarkably, this enzyme was able to hydrolyse all the epoxides to the respective 1,2-diols, indicating a wide-range substrate scope acceptance. Moreover, the (R)- and (S)-enantiomers of styrene oxide, epichlorohydrin and 1,2-epoxybutane were used to monitor enantiopreference. Taken together, the functional and structural analyses indicate that this enzyme is an attractive biocatalyst for future biotechnological applications.

Indexed as

Bacterial ProteinsEpoxide HydrolasesModels, MolecularProtein ConformationStreptomycesBacterial ProteinsEpoxide Hydrolasesbiocatalysisepoxide hydrolasesStreptomycesα/β-hydrolases

Identifiers

PMID32876062
PMCPMC7466753
OpenAlexW3058607150

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.