Evidence map›Paper›PMID 32875282›Full record

ArticleJHEP reports : innovation in hepatology2020

Transcriptomic analysis across liver diseases reveals disease-modulating activation of constitutive androstane receptor in cholestasis.

Bhoomika Mathur, Waqar Arif, Megan E Patton, Rahiman Faiyaz, Jian Liu, Jennifer Yeh, Sanjiv Harpavat, Kristina Schoonjans, Auinash Kalsotra, Antony M Wheatley and 1 more

Open access · goldAbstract read
In one paragraph

Article in JHEP reports : innovation in hepatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Cholestasis in hepatitis E virus infection.World journal of hepatology · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Regenerating research and life.JHEP reports : innovation in hepatology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Bhoomika MathurDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Waqar ArifDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Megan E PattonDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Rahiman FaiyazDepartment of Physiology, School of Medicine, National University of Ireland, Galway, Ireland.
Jian LiuDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Jennifer YehDepartment of Pediatrics, Texas Children's Hospital, Houston, TX, USA.
Sanjiv HarpavatDepartment of Pediatrics, Texas Children's Hospital, Houston, TX, USA.
Kristina SchoonjansInstitute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Auinash KalsotraDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Antony M WheatleyDepartment of Physiology, School of Medicine, National University of Ireland, Galway, Ireland.
Sayeepriyadarshini AnakkDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
University of Illinois Urbana-Champaign · USOllscoil na Gaillimhe – University of Galway · IETexas Children's Hospital · USÉcole Polytechnique Fédérale de Lausanne · CH

Funding

TNF ALPHA AND RECOVERY FROM ALCOHOLIC LIVER INJURYR01AA010154 · NIAAA · JOHNS HOPKINS UNIVERSITY · PI ANNA MAE ELIZABETH DIEHL, Auinash Kalsotra · 1994 to 2026
$6.1M
Post-transcriptional mechanisms of gene regulation in cardiac cell growth and developmentR01HL126845 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KALSOTRA, AUINASH · 2015 to 2023
$3.5M
Understanding Mechanisms that Regulate Liver Growth and FunctionR01DK113080 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Sayeepriyadarshini Anakk · 2017 to 2026
$3.3M
The role of SRSF1 in liver function and NASHF30DK108567 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ARIF, WAQAR · 2016 to 2020
$248k
NHLBI NIH HHS R01 HL126845NIDDK NIH HHS F30 DK108567NIDDK NIH HHS R01 DK113080
6 · The paper itself

Abstract

BACKGROUND &

aimsLiver diseases are caused by many factors, such as genetics, nutrition, and viruses. Therefore, it is important to delineate transcriptomic changes that occur in various liver diseases.

methodsWe performed high-throughput sequencing of mouse livers with diverse types of injuries, including cholestasis, diet-induced steatosis, and partial hepatectomy. Comparative analysis of liver transcriptome from mice and human samples of viral infections (HBV and HCV), alcoholic hepatitis (AH), non-alcoholic steatohepatitis (NASH), and biliary atresia revealed distinct and overlapping gene profiles associated with liver diseases. We hypothesised that discrete molecular signatures could be utilised to assess therapeutic outcomes. We focused on cholestasis to test and validate the hypothesis using pharmacological approaches.

resultsHere, we report significant overlap in the expression of inflammatory and proliferation-related genes across liver diseases. However, cholestatic livers were unique and displayed robust induction of genes involved in drug metabolism. Consistently, we found that constitutive androstane receptor (CAR) activation is crucial for the induction of the drug metabolic gene programme in cholestasis. When challenged, cholestatic mice were protected against zoxazolamine-induced paralysis and acetaminophen-induced hepatotoxicity. These protective effects were diminished upon inhibition of CAR activity. Further, drug metabolic genes were also induced in the livers from a subset of biliary atresia patients, but not in HBV and HCV infections, AH, or NASH. We also found a higher expression of CYP2B6, a CAR target, in the livers of biliary atresia patients, underscoring the clinical importance of our findings.

conclusionsComparative transcriptome analysis of different liver disorders revealed specific induction of phase I and II metabolic genes in cholestasis. Our results demonstrate that CAR activation may lead to variations in drug metabolism and clinical outcomes in biliary atresia. LAY SUMMARY: Transcriptomic analysis of diverse liver diseases revealed alterations in common and distinct pathways. Specifically, in cholestasis, we found that detoxification genes and their activity are increased. Thus, cholestatic patients may have an unintended consequence on drug metabolism and not only have a beneficial effect against liver toxicity, but also may require adjustments to their therapeutic dosage.

Indexed as

AH, alcoholic hepatitisALT, alanine aminotransferaseAPAP, acetaminophenAST, aspartate aminotransferaseBile acidsCA, cholic acidCAR, constitutive androstane receptorCholestasisCytochrome p450DKO, double knockoutDrug metabolismFxr, farnesoid X receptorFXRKO, FXR knockoutGGT, gamma-glutamyl transferaseGSH, glutathione disulphideLiver diseasesNAPQI, N-acetyl-p-benzoquinone imineNASH, non-alcoholic steatohepatitisNuclear receptorsPCN, pregnenolone 16 alpha-carbonitrilePHx, partial hepatectomyPXR, pregnane X receptorSHPKO, SHP knockoutShp, small heterodimer partnerTranscriptomicsWT, wild type

Identifiers

PMID32875282
PMCPMC7452294
OpenAlexW3039244035

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.