Evidence map›Paper›PMID 32874509›Full record

ArticleChemical science2020

Use of an asparaginyl endopeptidase for chemo-enzymatic peptide and protein labeling.

T M Simon Tang, Davide Cardella, Alexander J Lander, Xuefei Li, Jorge S Escudero, Yu-Hsuan Tsai, Louis Y P Luk

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 65 citations in OpenAlex.

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  14. Promiscuous Enzymes for Residue-Specific Peptide and Protein Late-Stage Functionalization.Chembiochem : a European journal of chemical biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

T M Simon TangSchool of Chemistry , Cardiff University , Main Building, Park Place , Cardiff , CF10 3AT , UK . Email: lukly@cardiff.ac.uk.ORCID 0000-0002-5149-4624
Davide CardellaSchool of Chemistry , Cardiff University , Main Building, Park Place , Cardiff , CF10 3AT , UK . Email: lukly@cardiff.ac.uk.ORCID 0000-0003-1025-8710
Alexander J LanderSchool of Chemistry , Cardiff University , Main Building, Park Place , Cardiff , CF10 3AT , UK . Email: lukly@cardiff.ac.uk.ORCID 0000-0003-0733-6597
Xuefei LiSchool of Chemistry , Cardiff University , Main Building, Park Place , Cardiff , CF10 3AT , UK . Email: lukly@cardiff.ac.uk.
Jorge S EscuderoSchool of Chemistry , Cardiff University , Main Building, Park Place , Cardiff , CF10 3AT , UK . Email: lukly@cardiff.ac.uk.
Yu-Hsuan TsaiSchool of Chemistry , Cardiff University , Main Building, Park Place , Cardiff , CF10 3AT , UK . Email: lukly@cardiff.ac.uk.ORCID 0000-0003-0589-5088
Louis Y P LukSchool of Chemistry , Cardiff University , Main Building, Park Place , Cardiff , CF10 3AT , UK . Email: lukly@cardiff.ac.uk.ORCID 0000-0002-7864-6261
Cardiff University · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Asparaginyl endopeptidases (AEPs) are ideal for peptide and protein labeling. However, because of the reaction reversibility, a large excess of labels or backbone modified substrates are needed. In turn, simple and cheap reagents can be used to label N-terminal cysteine, but its availability inherently limits the potential applications. Aiming to address these issues, we have created a chemo-enzymatic labeling system that exploits the substrate promiscuity of AEP with the facile chemical reaction between N-terminal cysteine and 2-formyl phenylboronic acid (FPBA). In this approach, AEP is used to ligate polypeptides with a Asn-Cys-Leu recognition sequence with counterparts possessing an N-terminal Gly-Leu. Instead of being a labeling reagent, the commercially available FPBA serves as a scavenger converting the byproduct Cys-Leu into an inert thiazolidine derivative. This consequently drives the AEP labeling reaction forward to product formation with a lower ratio of label to protein substrate. By carefully screening the reaction conditions for optimal compatibility and minimal hydrolysis, conversion to the ligated product in the model reaction resulted in excellent yields. The versatility of this AEP-ligation/FPBA-coupling system was further demonstrated by site-specifically labeling the N- or C-termini of various proteins.

Identifiers

PMID32874509
PMCPMC7441500
OpenAlexW3025532812

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.