Evidence map›Paper›PMID 32872430›Full record

ArticleGenes2020

Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia.

Cécile Triay, Matthew A Conte, Jean-François Baroiller, Etienne Bezault, Frances E Clark, David J Penman, Thomas D Kocher, Helena D'Cotta

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Absence ofInternational journal of molecular sciences · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Epigenetic Regulation and Environmental Sex Determination in Cichlid Fishes.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Cécile TriayUMR-Institut des Sciences de l'Evolution de Montpellier, Centre National de la Recherche Scientifique, Institut de Recherche pour le Développement, Ecole Pratique des Hautes Etudes, University of Montpellier, 34090 Montpellier, France.
Matthew A ConteDepartment of Biology, University of Maryland, College Park, MD 20742, USA.
Jean-François BaroillerUMR-Institut des Sciences de l'Evolution de Montpellier, Centre National de la Recherche Scientifique, Institut de Recherche pour le Développement, Ecole Pratique des Hautes Etudes, University of Montpellier, 34090 Montpellier, France.
Etienne BezaultUMR BOREA, CNRS-7208/MNHN/UPMC/IRD-207/UCN/UA, Université des Antilles, 97159 Guadeloupe, France.ORCID 0000-0001-7172-6480
Frances E ClarkDepartment of Biology, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0001-6132-2976
David J PenmanInstitute of Aquaculture, School of Natural Sciences, University of Stirling, Stirling, Scotland FK9 4LA, UK.
Thomas D KocherDepartment of Biology, University of Maryland, College Park, MD 20742, USA.ORCID 0000-0002-7547-0133
Helena D'CottaUMR-Institut des Sciences de l'Evolution de Montpellier, Centre National de la Recherche Scientifique, Institut de Recherche pour le Développement, Ecole Pratique des Hautes Etudes, University of Montpellier, 34090 Montpellier, France.
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRUniversity of Maryland, College Park · USCentre National de la Recherche Scientifique · FRUniversity of Stirling · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In domesticated strains of the Nile tilapia, phenotypic sex has been linked to genetic variants on linkage groups 1, 20 and 23. This diversity of sex-loci might reflect a naturally polymorphic sex determination system in Nile tilapia, or it might be an artefact arising from the process of domestication. Here, we searched for sex-determiners in wild populations from Kpandu, Lake Volta (Ghana-West Africa), and from Lake Koka (Ethiopia-East Africa) that have not been subjected to any genetic manipulation. We analysed lab-reared families using double-digest Restriction Associated DNA sequencing (ddRAD) and analysed wild-caught males and females with pooled whole-genome sequencing (WGS). Strong sex-linked signals were found on LG23 in both populations, and sex-linked signals with LG3 were observed in Kpandu samples. WGS uncovered blocks of high sequence coverage, suggesting the presence of B chromosomes. We confirmed the existence of a tandem

Indexed as

Genetic LinkageGenetic MarkersPolymorphism, Single NucleotideQuantitative Trait LociAnimalsChromosome MappingCichlidsFemaleMaleSequence Analysis, DNASex Determination ProcessesWhole Genome SequencingGenetic Markersamhmale duplicationNile tilapiasex-determinantY-chromosome

Identifiers

PMID32872430
PMCPMC7563666
OpenAlexW3081611178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.