Evidence map›Paper›PMID 32870911›Full record

ArticlePloS one2020

Phylogenetic clustering networks among heterosexual migrants with new HIV diagnoses post-migration in Australia.

Rachel Sacks-Davis, Doris Chibo, Elizabeth Peach, Eman Aleksic, Suzanne M Crowe, Carol El Hayek, Tafireyi Marukutira, Nasra Higgins, Mark Stoove, Margaret Hellard

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Rachel Sacks-DavisBurnet Institute, Melbourne, Victoria, Australia.ORCID 0000-0003-0860-2762
Doris ChiboVictorian Infectious Disease Reference Laboratory, Peter Doherty Institute, University of Melbourne, Melbourne, Victoria, Australia.
Elizabeth PeachBurnet Institute, Melbourne, Victoria, Australia.
Eman AleksicBurnet Institute, Melbourne, Victoria, Australia.
Suzanne M CroweBurnet Institute, Melbourne, Victoria, Australia.
Carol El HayekBurnet Institute, Melbourne, Victoria, Australia.
Tafireyi MarukutiraBurnet Institute, Melbourne, Victoria, Australia.ORCID 0000-0003-1142-6114
Nasra HigginsDepartment of Health and Human Services, Melbourne, Victoria, Australia.
Mark StooveBurnet Institute, Melbourne, Victoria, Australia.
Margaret HellardBurnet Institute, Melbourne, Victoria, Australia.
Burnet Institute · AUDepartment of Health and Human Services · AUThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIt is estimated that approximately half of new HIV diagnoses among heterosexual migrants in Victoria, Australia, were acquired post-migration. We investigated the characteristics of phylogenetic clusters in notified cases of HIV among heterosexual migrants.

methodsPartial HIV pol sequences obtained from routine clinical genotype tests were linked to Victorian HIV notifications with the following exposures listed on the notification form: heterosexual sexual contact, injecting drug use, bisexual sexual contact, male-to male sexual contact or heterosexual sexual contact in combination with injecting drug use, unknown exposure. Those with heterosexual sexual contact as the only exposure were the focus of this study, with the other exposures included to better understand transmission networks. Additional reference sequences were extracted from the Los Alamos database. Maximum likelihood methods were used to infer the phylogeny and the robustness of the resulting tree was assessed using bootstrap analysis. Phylogenetic clusters were defined on the basis of bootstrap and genetic distance.

resultsHIV pol sequences were available for 332 of 445 HIV notifications attributed to only heterosexual sexual contact in Victoria from 2005-2014. Forty-three phylogenetic clusters containing at least one heterosexual migrant were detected, 30 (70%) of which were pairs. The characteristics of these phylogenetic clusters varied considerably by cluster size. Pairs were more likely to be composed of people living with HIV from a single country of birth (p = 0.032). Larger clusters (n≥3) were more likely to contain people born in Australian/New Zealand (p = 0.002), migrants from more than one country of birth (p = 0.013) and viral subtype-B, the most common subtype in Australia (p = 0.006). Pairs were significantly more likely to contain females (p = 0.037) and less likely to include HIV diagnoses with male-to-male sexual contact reported as a possible exposure (p<0.001) compared to larger clusters (n≥3).

conclusionMigrants appear to be at elevated risk of HIV acquisition, in part due to intimate relationships between migrants from the same country of origin, and in part due to risks associated with the broader Australian HIV epidemic. However, there was no evidence of large transmission clusters driven by heterosexual transmission between migrants. A multipronged approach to prevention of HIV among migrants is warranted.

Indexed as

PhylogenyAdultAustraliaCluster AnalysisFemaleHeterosexualityHIVHIV-1HIV InfectionsHumansMaleMiddle Agedpol Gene Products, Human Immunodeficiency VirusTransients and Migrantspol Gene Products, Human Immunodeficiency Virus

Identifiers

PMID32870911
PMCPMC7462279
OpenAlexW3082821653

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.