Evidence map›Paper›PMID 32870405›Full record

ArticleArchives of virology2020

Novel Caulobacter bacteriophages illustrate the diversity of the podovirus genus Rauchvirus.

Bert Ely, Jana Liese, Scott Corley, Doreen Nguyen, Kiesha Wilson, Louis Berrios

Abstract read
In one paragraph

Article in Archives of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bert ElyDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA. ely@s.edu.ORCID http://orcid.org/0000-0002-2768-2940
Jana LieseDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Scott CorleyDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Doreen NguyenDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Kiesha WilsonDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Louis BerriosDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.

Funding

UofSC Postbaccalaureate Research Education ProgramR25GM066526 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI ARMSTRONG, ALISSA RICHMOND, ELY, BERT · 2004 to 2024
$5.4M
University of South Carolina Initiative for Maximizing Student DevelopmentR25GM076277 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI ELY, BERT · 2006 to 2015
$2.6M
NIGMS NIH HHS GM076277NIGMS NIH HHS R25 GM066526NIGMS NIH HHS R25 GM076277
6 · The paper itself

Abstract

The podovirus BPP-1 is currently the only member of the Podovirus genus Rauchvirus. Here, we describe three new Caulobacter bacteriophages (Jess A, SR18, and RW) that show genetic similarity to BPP-1 but have many different genetic and structural features that differentiate them from BPP-1. Jess A and SR18 are closely related to each other and should be considered two members of a new species. They share a similar gene order with BPP-1. However, they do not appear to form lysogens or have the tropism switching mechanism that has been described for BPP-1. Bacteriophage RW also exhibits some homology to BPP-1. However, it is quite different from the other three phages, and we propose that it should be considered a representative of a third species of the genus Rauchvirus. Taken together, the differences among these four members of the genus Rauchvirus indicate that this divergent genus has a long evolutionary history and that there are many more rauchviruses waiting to be discovered.

Indexed as

Genome, ViralPhylogenyCaulobacterEvolution, MolecularGene OrderPodoviridaeViral ProteinsViral Proteins

Identifiers

PMID32870405
PMCPMC9391073

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.