Evidence map›Paper›PMID 32870257›Full record

ArticleThe Journal of experimental medicine2020

APOBEC3A catalyzes mutation and drives carcinogenesis in vivo.

Emily K Law, Rena Levin-Klein, Matthew C Jarvis, Hyoung Kim, Prokopios P Argyris, Michael A Carpenter, Gabriel J Starrett, Nuri A Temiz, Lindsay K Larson, Cameron Durfee and 9 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed, 1 pooled it
7.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 1 synthesis or guideline pooled it, 150 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Distinct repair processes produce APOBEC-induced deletions, tandem substitutions, and complex mutations in yeast and human cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Squamous-state excursions activate APOBEC3A in cancer.bioRxiv : the preprint server for biology · 2026
    Article
  6. Observational
  7. Article
  8. Article
  9. HAMMER: Hairpin-based APOBEC3A-mediated mRNA editing reporter.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Emily K LawHoward Hughes Medical Institute, University of Minnesota, Minneapolis, MN.
Rena Levin-KleinMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Matthew C JarvisMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Hyoung KimDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.
Prokopios P ArgyrisHoward Hughes Medical Institute, University of Minnesota, Minneapolis, MN.
Michael A CarpenterHoward Hughes Medical Institute, University of Minnesota, Minneapolis, MN.
Gabriel J StarrettMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Nuri A TemizMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Lindsay K LarsonMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Cameron DurfeeMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Michael B BurnsMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Rachel I VogelMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Spyridon StavrouDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.
Alexya N AguileraDepartment of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, IL.
Sandra WagnerMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
David A LargaespadaMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Timothy K StarrMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Susan R RossDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.
Reuben S HarrisHoward Hughes Medical Institute, University of Minnesota, Minneapolis, MN.
University of Minnesota · USUniversity of Illinois Chicago · USNational Institutes of Health · USUniversity of Pennsylvania · US

Funding

PROJECT 3 – BIOLOGY OF DNA DEAMINASES IN CANCERP01CA234228 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Reuben S Harris · 2019 to 2026
$14.5M
TRAINING GRANT IN MICROBIOLOGY/CANCER RESEARCHT32CA009138 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Scott M. Dehm · 1985 to 2026
$11.3M
TRAINING IN HEMOGLOBIN &CELL MEMBRANE RESEARCHT32HL007062 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Jeffrey S. Miller, Gregory M Vercellotti · 1985 to 2026
$10.3M
Role of APOBEC3 in in vivo Restriction of Retrovirus InfectionR01AI085015 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROSS, SUSAN R · 2010 to 2019
$3.9M
APOBEC3-mediated damage of host genomic DNA in vivoR21AG047114 · NIA · UNIVERSITY OF PENNSYLVANIA · PI ROSS, SUSAN R · 2015 to 2016
$440k
The APOBEC in APOBEC mutagenesisF31CA243306 · NCI · UNIVERSITY OF MINNESOTA · PI JARVIS, MATTHEW C · 2019 to 2021
$94k
Role of APOBEC3B in Epigenetic Regulation and Transformation in CancerF32CA232458 · NCI · UNIVERSITY OF MINNESOTA · PI LEVIN-KLEIN, RENA · 2018 to 2018
$59k
Howard Hughes Medical InstituteNCI NIH HHS F31 CA243306NCI NIH HHS F32 CA232458NCI NIH HHS P01 CA234228NCI NIH HHS T32 CA009138NHLBI NIH HHS T32 HL007062NIAID NIH HHS R01 AI085015NIA NIH HHS R21 AG047114
6 · The paper itself

Abstract

The APOBEC3 family of antiviral DNA cytosine deaminases is implicated as the second largest source of mutation in cancer. This mutational process may be a causal driver or inconsequential passenger to the overall tumor phenotype. We show that human APOBEC3A expression in murine colon and liver tissues increases tumorigenesis. All other APOBEC3 family members, including APOBEC3B, fail to promote liver tumor formation. Tumor DNA sequences from APOBEC3A-expressing animals display hallmark APOBEC signature mutations in TCA/T motifs. Bioinformatic comparisons of the observed APOBEC3A mutation signature in murine tumors, previously reported APOBEC3A and APOBEC3B mutation signatures in yeast, and reanalyzed APOBEC mutation signatures in human tumor datasets support cause-and-effect relationships for APOBEC3A-catalyzed deamination and mutagenesis in driving multiple human cancers.

Indexed as

BiocatalysisAdenomatous Polyposis ColiAnimalsBase SequenceCarcinogenesisCytidine DeaminaseDNA Transposable ElementsHumansHydrolasesIntestinal NeoplasmsLiver NeoplasmsLiver RegenerationLoss of HeterozygosityMice, TransgenicMutationPolypsAPOBEC3A protein, humanCytidine DeaminaseDNA Transposable ElementsfumarylacetoacetaseHydrolasesProteinsRNA, Messenger

Identifiers

PMID32870257
PMCPMC7953736
OpenAlexW3082740270

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.