Evidence map›Paper›PMID 32869020›Full record

ArticlebioRxiv : the preprint server for biology2020

A simplified cell-based assay to identify coronavirus 3CL protease inhibitors.

Samuel J Resnick, Sho Iketani, Seo Jung Hong, Arie Zask, Hengrui Liu, Sungsoo Kim, Schuyler Melore, Manoj S Nair, Yaoxing Huang, Nicholas E S Tay and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Samuel J ResnickDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Sho IketaniAaron Diamond AIDS Research Center, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Seo Jung HongDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Arie ZaskDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
Hengrui LiuDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.
Sungsoo KimDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Schuyler MeloreDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Manoj S NairAaron Diamond AIDS Research Center, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Yaoxing HuangAaron Diamond AIDS Research Center, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Nicholas E S TayDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.
Tomislav RovisDepartment of Chemistry, Columbia University, New York, NY, 10027, USA.
Hee Won YangDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Brent R StockwellDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
David D HoAaron Diamond AIDS Research Center, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Alejandro ChavezDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA.

Funding

Columbia University Graduate Training Program in Microbiology and ImmunologyT32AI106711 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Nicholas Arpaia, Uttiya Basu · 2014 to 2026
$2.1M
High-throughput disease modeling to uncover shared and unique characteristics among neurodegenerative diseasesF31NS111851 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI RESNICK, SAMUEL JACKSON · 2019 to 2020
$91k
NIAID NIH HHS T32 AI106711NINDS NIH HHS F31 NS111851
6 · The paper itself

Abstract

We describe a mammalian cell-based assay capable of identifying coronavirus 3CL protease (3CLpro) inhibitors without requiring the use of live virus. By enabling the facile testing of compounds across a range of coronavirus 3CLpro enzymes, including the one from SARS-CoV-2, we are able to quickly identify compounds with broad or narrow spectra of activity. We further demonstrate the utility of our approach by performing a curated compound screen along with structure-activity profiling of a series of small molecules to identify compounds with antiviral activity. Throughout these studies, we observed concordance between data emerging from this assay and from live virus assays. By democratizing the testing of 3CL inhibitors to enable screening in the majority of laboratories rather than the few with extensive biosafety infrastructure, we hope to expedite the search for coronavirus 3CL protease inhibitors, to address the current epidemic and future ones that will inevitably arise.

Identifiers

PMID32869020
PMCPMC7457602

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.