Evidence map›Paper›PMID 32868853›Full record

ArticleScientific reports2020

Demystifying biotrophs: FISHing for mRNAs to decipher plant and algal pathogen-host interaction at the single cell level.

Julia Badstöber, Claire M M Gachon, Jutta Ludwig-Müller, Adolf M Sandbichler, Sigrid Neuhauser

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. What Can We Learn from -Omics Approaches to Understand Clubroot Disease?International journal of molecular sciences · 2022
    Review
  7. Article
  8. Molecular Pathotyping ofPathogens (Basel, Switzerland) · 2021
    Review
  9. Candidate Effectors ofFrontiers in microbiology · 2021
    Article
  10. Endomembrane-TargetingFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Julia BadstöberInstitute of Microbiology, University of Innsbruck, 6020, Innsbruck, Austria.
Claire M M GachonThe Scottish Association for Marine Science, Scottish Marine Institute, Oban, PA37 1QA, UK.
Jutta Ludwig-MüllerInstitute of Botany, Technische Universität Dresden, 01217, Dresden, Germany.
Adolf M SandbichlerInstitute of Zoology, University of Innsbruck, 6020, Innsbruck, Austria.
Sigrid NeuhauserInstitute of Microbiology, University of Innsbruck, 6020, Innsbruck, Austria. Sigrid.Neuhauser@uibk.ac.at.
Universität Innsbruck · ATScottish Association For Marine Science · GBTU Dresden · DE

Funding

Austrian Science Fund FWF Y 801
6 · The paper itself

Abstract

Plant-pathogen interactions follow spatial and temporal developmental dynamics where gene expression in pathogen and host undergo crucial changes. Therefore, it is of great interest to detect, quantify and localise where and when key genes are active to understand these processes. Many pathosystems are not accessible for genetic amendments or other spatially-resolved gene expression monitoring methods. Here, we adapt single molecule FISH techniques to demonstrate the presence and activity of mRNAs at the single-cell level using phytomyxids in their plant and algal host in lab and field material. This allowed us to monitor and quantify the expression of genes from the clubroot pathogen Plasmodiophora brassicae, several species of its Brassica hosts, and of several brown algae, including the genome model Ectocarpus siliculosus, infected with the phytomyxid Maullinia ectocarpii. We show that mRNAs are localised along a spatiotemporal gradient, thus providing a proof-of-concept of the usefulness of single-molecule FISH to increase knowledge about the interactions between plants, algae and phytomyxids. The methods used are easily applicable to any interaction between microbes and their algal or plant host, and have therefore the potential to rapidly increase our understanding of key, spatially- and temporally-resolved processes underpinning complex plant-microbe interactions.

Indexed as

In Situ Hybridization, FluorescenceBrassicaCercozoaHost-Parasite InteractionsPhaeophyceaePlant DiseasesRNA, AlgalRNA, MessengerRNA, PlantRNA, AlgalRNA, MessengerRNA, Plant

Identifiers

PMID32868853
PMCPMC7459097
OpenAlexW3081836427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.