Evidence map›Paper›PMID 32868844›Full record

ArticleScientific reports2020

Genome-wide identification and analysis of GRAS transcription factors in the bottle gourd genome.

Navjot Singh Sidhu, Gomsie Pruthi, Sahildeep Singh, Ritika Bishnoi, Deepak Singla

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  12. Systems biology of resurrection plants.Cellular and molecular life sciences : CMLS · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Navjot Singh SidhuSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Gomsie PruthiSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Sahildeep SinghSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Ritika BishnoiSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Deepak SinglaSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India. deepak@pau.edu.
Punjab Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GRAS genes belong to the plant-specific transcription factors (TF's) family that are known to be involved in plant growth and development. In this study, we have identified 37 genes from the bottle gourd genome that encodes for GRAS TF's. Except for the SCLA, we were able to identify at least one gene from each of the 17 subfamilies. Gene structure and chromosomal analysis showed that maximum seven genes are present on Chr7 followed by six genes on Chr1. The subcellular location analysis revealed that most of the genes were localized in the nucleus, except for a few in chloroplast and mitochondria. Additionally, we have identified one tandem gene duplication event on Chr7 and three major motifs that were present in all the GRAS genes. Furthermore, the protein-protein interaction prediction and gene expression analysis showed five candidate hub-genes interact with various other genes and thus probably control the expression of interacting partners in different plant tissues. Overall, this study provides a comprehensive analysis of GRAS transcription factors in bottle gourd genome which could be further extended to other vegetable crops.

Indexed as

Genome, PlantChromosomes, PlantCrops, AgriculturalCucurbitaProtein BindingSubcellular FractionsTranscription FactorsTranscription Factors

Identifiers

PMID32868844
PMCPMC7459283
OpenAlexW3082052004

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.